Difference between revisions of "Data Jamboree 2/Preparation"
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*Things to prepare ahead of time | *Things to prepare ahead of time | ||
| − | **Have flipcharts, markers, and tape (or pushpins) for paper mockups | + | **Have flipcharts, markers, and tape (or pushpins) for paper mockups (OK - Paula) |
| − | **Need slims for TAO and PATO (Wasila, Jim) | + | **Need slims for TAO and PATO (Done - Wasila, Jim) |
**Curation Exercise | **Curation Exercise | ||
***Revise same (Group annotation exercise) from data jamboree 1 | ***Revise same (Group annotation exercise) from data jamboree 1 | ||
| − | ****Move making Taxon list to beginning; make matrix to merge; add instructions ( | + | ****Move making Taxon list to beginning; make matrix to merge; add instructions ''(- Done WD 9/22)'' |
****Keep exercise to 1 hour | ****Keep exercise to 1 hour | ||
***Phenex documentation (Jim) | ***Phenex documentation (Jim) | ||
| − | ***Upload to fileshare; print hard copies for all participants; email to participants (Wasila) | + | ***Upload to fileshare; print hard copies for all participants (Paula); email to participants (Wasila) |
**Consistency Experiment | **Consistency Experiment | ||
***Revise so that results are publishable (Wasila & all) - low priority | ***Revise so that results are publishable (Wasila & all) - low priority | ||
| − | ***Get feedback on experiment from advisors ahead of time | + | ***Get feedback on experiment from advisors ahead of time (emailed advisors, 9/24 - Wasila) |
| − | |||
| − | |||
***Upload to fileshare; print hard copies for all participants; email to participants (Wasila) | ***Upload to fileshare; print hard copies for all participants; email to participants (Wasila) | ||
| − | *Things to contact participants about ahead of time (develop letter prior to conference call) | + | **Revise [[Guide_to_Character_Annotation|Annotation guide]] on wiki -- (Wasila & curators) |
| − | **bring laptops (Mac or PC | + | *Things to contact participants about ahead of time (develop letter prior to conference call ''- Done PM Sept 17'') |
| − | ***how to download Phenex, Mesquite; links to each | + | **bring laptops (Mac or PC - Jim will ask and send them Java download link) |
| − | **how to subscribe to Phenoscape-curators and Teleost-discuss | + | ***how to download Phenex (Jim will send instructions), Mesquite (Peter will send instructions); links to each |
| − | **send link for to Phenoscape publications spreadsheet (public access now) | + | **how to subscribe to Phenoscape-curators and Teleost-discuss ''(- Done WD Sept 18)'' |
| − | **email each of the four participants pdfs of 3 assigned papers and 3 Phenex files | + | **send link for to Phenoscape publications spreadsheet (public access now) (Wasila) |
| + | **email each of the four participants pdfs of 3 or 4 (Grande) assigned papers and 3 or 4 Phenex files (Wasila) | ||
* Curation | * Curation | ||
| − | **Papers for four ichthylogists selected and in process of being merged and updated with character descriptions | + | **Papers for four ichthylogists selected and in process of being merged and updated with character descriptions (Paula) |
** Plan to add TAO terms for EQ annotation at SD workshop (Wasila) | ** Plan to add TAO terms for EQ annotation at SD workshop (Wasila) | ||
** Plan to add TTO taxa and make corrections at SD workshop (Peter) | ** Plan to add TTO taxa and make corrections at SD workshop (Peter) | ||
*Participant papers | *Participant papers | ||
| − | **Correspond with participants regarding their three assigned publications for annotation at the data jamboree - | + | **Correspond with participants regarding their three assigned publications for annotation at the data jamboree - |
***Wasila contacts: Sabaj Perez (Lundberg) - ''Done (WD)'' | ***Wasila contacts: Sabaj Perez (Lundberg) - ''Done (WD)'' | ||
***Paula contacts: Grande & Mayden & Hilton - ''(done 12 Sept PM)'' | ***Paula contacts: Grande & Mayden & Hilton - ''(done 12 Sept PM)'' | ||
| − | **Prepare neXML files for each participant (see Phenoscape Google spreadsheet for status) | + | **Prepare neXML files for each participant (see Phenoscape Google spreadsheet for status; Paula) |
| − | ***Include taxon list, matrix, character and state descriptions filled in | + | ***Include taxon list, matrix, character and state descriptions filled in (Paula) |
| − | ***Prepare CD | + | ***Prepare CD with copies of neXML files for each participant (Paula) |
**Provide corresponding pdf file for each neXML file | **Provide corresponding pdf file for each neXML file | ||
*Participant-personnel pairs: | *Participant-personnel pairs: | ||
| Line 37: | Line 36: | ||
**Mayden (with Paula Mabee) | **Mayden (with Paula Mabee) | ||
**Sabaj Perez (with John Lundberg) | **Sabaj Perez (with John Lundberg) | ||
| − | (Peter Midford, Jeff Engeman (and Mike Wallinga | + | (Peter Midford, Jeff Engeman (and Mike Wallinga) are "floater" curators) |
| − | *Finalize [[Data_Jamboree_2/agenda|agenda]] | + | *Finalize [[Data_Jamboree_2/agenda|agenda]] - done (PM) |
| − | *Copies of pubs ( | + | * Bring data projector (Paula - OK) |
| + | *Copies of pubs (1 each; Paula) | ||
[[Category:Data Jamboree 2]] | [[Category:Data Jamboree 2]] | ||
Latest revision as of 17:43, 24 September 2008
- Things to prepare ahead of time
- Have flipcharts, markers, and tape (or pushpins) for paper mockups (OK - Paula)
- Need slims for TAO and PATO (Done - Wasila, Jim)
- Curation Exercise
- Revise same (Group annotation exercise) from data jamboree 1
- Move making Taxon list to beginning; make matrix to merge; add instructions (- Done WD 9/22)
- Keep exercise to 1 hour
- Phenex documentation (Jim)
- Upload to fileshare; print hard copies for all participants (Paula); email to participants (Wasila)
- Revise same (Group annotation exercise) from data jamboree 1
- Consistency Experiment
- Revise so that results are publishable (Wasila & all) - low priority
- Get feedback on experiment from advisors ahead of time (emailed advisors, 9/24 - Wasila)
- Upload to fileshare; print hard copies for all participants; email to participants (Wasila)
- Revise Annotation guide on wiki -- (Wasila & curators)
- Things to contact participants about ahead of time (develop letter prior to conference call - Done PM Sept 17)
- bring laptops (Mac or PC - Jim will ask and send them Java download link)
- how to download Phenex (Jim will send instructions), Mesquite (Peter will send instructions); links to each
- how to subscribe to Phenoscape-curators and Teleost-discuss (- Done WD Sept 18)
- send link for to Phenoscape publications spreadsheet (public access now) (Wasila)
- email each of the four participants pdfs of 3 or 4 (Grande) assigned papers and 3 or 4 Phenex files (Wasila)
- bring laptops (Mac or PC - Jim will ask and send them Java download link)
- Curation
- Papers for four ichthylogists selected and in process of being merged and updated with character descriptions (Paula)
- Plan to add TAO terms for EQ annotation at SD workshop (Wasila)
- Plan to add TTO taxa and make corrections at SD workshop (Peter)
- Participant papers
- Correspond with participants regarding their three assigned publications for annotation at the data jamboree -
- Wasila contacts: Sabaj Perez (Lundberg) - Done (WD)
- Paula contacts: Grande & Mayden & Hilton - (done 12 Sept PM)
- Prepare neXML files for each participant (see Phenoscape Google spreadsheet for status; Paula)
- Include taxon list, matrix, character and state descriptions filled in (Paula)
- Prepare CD with copies of neXML files for each participant (Paula)
- Provide corresponding pdf file for each neXML file
- Correspond with participants regarding their three assigned publications for annotation at the data jamboree -
- Participant-personnel pairs:
- Grande (with Wasila Dahdul)
- Hilton (with Jim Balhoff)
- Mayden (with Paula Mabee)
- Sabaj Perez (with John Lundberg)
(Peter Midford, Jeff Engeman (and Mike Wallinga) are "floater" curators)
- Finalize agenda - done (PM)
- Bring data projector (Paula - OK)
- Copies of pubs (1 each; Paula)
