Difference between revisions of "Phenex release history"

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''This page is currently incomplete and being updated.''
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{{StatusBox|''This page is outdated, obsolete and kept here solely for archival purposes. [https://github.com/phenoscape/Phenex/releases Phenex releases] are now kept in Github.''}}
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==Phenex 1.10==
 +
Released 2013-07-19.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.9...v1.10 Source changes]
 +
* New features for matrix editing: consolidate selected characters; create new character with selected states.
 +
 
 +
==Phenex 1.9==
 +
Released 2013-06-18.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.8...v1.9 Source changes]
 +
* New feature: ORB user settings for provisional term requests are now configurable.
 +
* Unified consistency checking between annotation checker panel and consistency review panel.
 +
* Updated user interface for native look on OS X Mountain Lion.
  
 
==Phenex 1.8==
 
==Phenex 1.8==
Line 7: Line 19:
  
 
==Phenex 1.7==
 
==Phenex 1.7==
 +
Released 2012-12-07.
 
* [https://github.com/phenoscape/Phenex/compare/v1.6.3...v1.7 Source changes]
 
* [https://github.com/phenoscape/Phenex/compare/v1.6.3...v1.7 Source changes]
 
* New feature: Annotation checker panel
 
* New feature: Annotation checker panel
Line 12: Line 25:
  
 
==Phenex 1.6.3==
 
==Phenex 1.6.3==
 +
Released 2012-12-05.
 
* [https://github.com/phenoscape/Phenex/compare/v1.6.2...v1.6.3 Source changes]
 
* [https://github.com/phenoscape/Phenex/compare/v1.6.2...v1.6.3 Source changes]
 +
* Bugfix: Added missing Phenex relations list to default ontology configuration.
  
 
==Phenex 1.6.2==
 
==Phenex 1.6.2==
 +
Released 2012-12-03.
 
* [https://github.com/phenoscape/Phenex/compare/v1.6.1...v1.6.2 Source changes]
 
* [https://github.com/phenoscape/Phenex/compare/v1.6.1...v1.6.2 Source changes]
 
* Fixed a problem with the version number in the release.
 
* Fixed a problem with the version number in the release.
  
 
==Phenex 1.6.1==
 
==Phenex 1.6.1==
 +
Released 2012-12-03.
 
* [https://github.com/phenoscape/Phenex/compare/v1.6...v1.6.1 Source changes]
 
* [https://github.com/phenoscape/Phenex/compare/v1.6...v1.6.1 Source changes]
 +
* Updated entities filter to allow any term with the UBERON prefix.
 +
* Fixed editing issue with publication notes field.
 +
* Fixed null pointer exception in tab-delimited export.
  
 
==Phenex 1.6==
 
==Phenex 1.6==
 +
Released 2012-10-09.
 
* [https://github.com/phenoscape/Phenex/compare/v1.5.1...v1.6 Source changes]
 
* [https://github.com/phenoscape/Phenex/compare/v1.5.1...v1.6 Source changes]
 +
* New feature: full support for reading, writing, and editing [[Phenex#Entering_polymorphic_or_uncertain_state_values|polymorphic values within matrix cells]].
 +
* Removed NEXUS import features. NEXUS files should instead be [[Phenex#Importing_data_from_a_NEXUS_file|converted to NeXML using Mesquite]].
 +
 +
==Phenex 1.5.1==
 +
Released 2012-10-03.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.5...v1.5.1 Source changes]
 +
* Fixed a problem with download of provisional terms from Bioportal.
 +
 +
==Phenex 1.5==
 +
Released 2012-09-20.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.4.3...v1.5 Source changes]
 +
* New feature: auto-migration of obsolete terms when there is a replaced_by tag.
 +
* New feature: auto-migration of provisional terms when a permanent ID has been assigned.
 +
* New feature: reading and writing of polymorphic/uncertain states from/to NeXML (this roundtrips values, but does not allow editing).
 +
* Phenex now displays an alert panel, rather than crashes, when there has been an ontology load error.
 +
* Reversed default for autosave feature (default is now OFF).
 +
 +
==Phenex 1.4.3==
 +
Released 2012-08-17.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.4.2...v1.4.3 Source changes]
 +
* Updated OBO-Edit libraries.
 +
 +
==Phenex 1.4.2==
 +
Released 2012-08-15.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.4.1...v1.4.2 Source changes]
 +
 +
==Phenex 1.4.1==
 +
Released 2012-08-03.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.4...v1.4.1 Source changes]
 +
 +
==Phenex 1.4==
 +
Released 2012-08-03.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.2.1...v1.4 Source changes]
 +
 +
==Phenex 1.2.1==
 +
Released 2012-01-30.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.2...v1.2.1 Source changes]
 +
 +
==Phenex 1.2==
 +
Released 2012-01-26.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.1.4…v1.2 Source changes]
 +
 +
==Phenex 1.1.4==
 +
Released 2011-09-20.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.1.3…v1.1.4 Source changes]
 +
 +
==Phenex 1.1.3==
 +
Released 2011-09-14.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.1.2…v1.1.3 Source changes]
 +
 +
==Phenex 1.1.2==
 +
Released 2010-10-25.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.1.1…v1.1.2 Source changes]
 +
 +
==Phenex 1.1.1==
 +
Released 2010-09-20.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.1…v1.1.1 Source changes]
 +
 +
==Phenex 1.1==
 +
Released 2010-09-02.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.0.5…v1.1 Source changes]
 +
 +
==Phenex 1.0.5==
 +
Released 2010-07-19.
 +
* [https://github.com/phenoscape/Phenex/compare/v1.0.4…v1.0.5 Source changes]
  
 
[[Category:Informatics]]
 
[[Category:Informatics]]
 
[[Category:Phenex]]
 
[[Category:Phenex]]
 
[[Category:Software]]
 
[[Category:Software]]
 +
[[Category:Obsolete pages]]

Latest revision as of 22:40, 11 December 2017

Status: This page is outdated, obsolete and kept here solely for archival purposes. Phenex releases are now kept in Github.

Phenex 1.10

Released 2013-07-19.

  • Source changes
  • New features for matrix editing: consolidate selected characters; create new character with selected states.

Phenex 1.9

Released 2013-06-18.

  • Source changes
  • New feature: ORB user settings for provisional term requests are now configurable.
  • Unified consistency checking between annotation checker panel and consistency review panel.
  • Updated user interface for native look on OS X Mountain Lion.

Phenex 1.8

Released 2013-03-05.

Phenex 1.7

Released 2012-12-07.

  • Source changes
  • New feature: Annotation checker panel
  • Increased max memory setting to 2 gigabytes.

Phenex 1.6.3

Released 2012-12-05.

  • Source changes
  • Bugfix: Added missing Phenex relations list to default ontology configuration.

Phenex 1.6.2

Released 2012-12-03.

  • Source changes
  • Fixed a problem with the version number in the release.

Phenex 1.6.1

Released 2012-12-03.

  • Source changes
  • Updated entities filter to allow any term with the UBERON prefix.
  • Fixed editing issue with publication notes field.
  • Fixed null pointer exception in tab-delimited export.

Phenex 1.6

Released 2012-10-09.

Phenex 1.5.1

Released 2012-10-03.

  • Source changes
  • Fixed a problem with download of provisional terms from Bioportal.

Phenex 1.5

Released 2012-09-20.

  • Source changes
  • New feature: auto-migration of obsolete terms when there is a replaced_by tag.
  • New feature: auto-migration of provisional terms when a permanent ID has been assigned.
  • New feature: reading and writing of polymorphic/uncertain states from/to NeXML (this roundtrips values, but does not allow editing).
  • Phenex now displays an alert panel, rather than crashes, when there has been an ontology load error.
  • Reversed default for autosave feature (default is now OFF).

Phenex 1.4.3

Released 2012-08-17.

Phenex 1.4.2

Released 2012-08-15.

Phenex 1.4.1

Released 2012-08-03.

Phenex 1.4

Released 2012-08-03.

Phenex 1.2.1

Released 2012-01-30.

Phenex 1.2

Released 2012-01-26.

Phenex 1.1.4

Released 2011-09-20.

Phenex 1.1.3

Released 2011-09-14.

Phenex 1.1.2

Released 2010-10-25.

Phenex 1.1.1

Released 2010-09-20.

Phenex 1.1

Released 2010-09-02.

Phenex 1.0.5

Released 2010-07-19.

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