Difference between revisions of "Phenoscape web UI"
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| + | Phenoscape web UI development plan. | ||
| + | |||
| + | ==2009== | ||
===February 2009=== | ===February 2009=== | ||
| − | * | + | *Mockup changes to existing interfaces required to incorporate 1/5/09 team feedback on existing interface components |
| − | + | * Taxon search interface '''Done''' | |
| − | + | ** Mockup interface using dummy data within web application - request group feedback | |
| − | |||
| − | |||
| − | |||
| − | * Taxon search interface | ||
| − | ** Mockup interface using dummy data within | ||
*** Front page search interface and results table - may include intermediate results summary page | *** Front page search interface and results table - may include intermediate results summary page | ||
| − | + | * Interface demo and feedback session - DECAP meeting, Feb. 27, 2009 '''Done''' | |
| − | |||
| − | * Interface demo and feedback session - DECAP meeting, Feb. 27, 2009 | ||
** Present screenshots and mockups | ** Present screenshots and mockups | ||
** Possible live demo depending on data service performance progress | ** Possible live demo depending on data service performance progress | ||
| + | *** Services should return in no more than 2 seconds | ||
*** Evaluate feasibility 2 weeks before meeting | *** Evaluate feasibility 2 weeks before meeting | ||
| + | * Mockup publication data interface within web application '''Done''' | ||
| + | * Mockup "splashy" search entry page - we should have a more graphically capturing entry gateway for exploring the data content | ||
| + | ** One of the following: | ||
| + | ***Hierarchical term explorer | ||
| + | ***Visual explorer, using schematic drawings ("the prototypical fish") | ||
| + | ***Visual explorer using 3D scans of catfish (and eventually zebrafish when done). | ||
| + | **Should explore various prototypes of these ideas using HTML mockups and get feedback from project team | ||
| + | * Mockup taxonomy-based tree-mapped data perspective | ||
| + | ** View taxonomic phenotype annotation results organized by a phylogenetic tree | ||
| + | ** Group phenotypes as simplistic union of descendant nodes, rather than ancestral reconstruction | ||
| + | ** Use taxonomy as basis for phylogenetic tree | ||
| + | **Develop HTML mockups in web application | ||
===March 2009=== | ===March 2009=== | ||
| − | * Incorporate | + | * Incorporate 1/5/09 team feedback on existing interface components '''In progress''' |
| − | ** | + | ** Anatomy term search results - reorganize according to [[:Image:Phenotype_search_page_mockup.jpg|sketch]] |
| − | ** | + | ** Gene search results - reorganize according to [[:Image:Gene_search_page_mockup.jpg|sketch]] |
| − | * | + | ** Taxonomic phenotype results page - add Order column for taxonomic grouping |
| − | * | + | ** Present various phenotypic results grouped by custom "character slim" done |
| + | *** Requires slim development by team members (Wasila, Paula) Done--[[User:Pmabee@usd.edu|Pmabee@usd.edu]] 12:20, 20 March 2009 (EDT)done and service implementation by Cartik | ||
| + | * Taxon search interface | ||
| + | ** Design data service schema to be implemented by Cartik | ||
| + | ** Implement interface using live data service once developed by Cartik | ||
===April 2009=== | ===April 2009=== | ||
| − | * " | + | * Implement "splashy" search entry page as defined by mockup work |
| + | * Incorporate publication data into user interface | ||
| + | ** Incorporate publication links into annotation results displays | ||
| + | *** Columns referencing numbers of taxonomic phenotype or mutant phenotype match results will be accompanied by a column including number of publications referencing the search item | ||
| + | *** Link from publication count to a publication listing | ||
| + | ** Publication listing includes brief citation each of which links to a publication detail page | ||
| + | ** Publication detail page(s) | ||
| + | *** Full citation information | ||
| + | *** Display curator credits | ||
| + | *** Display or link to original matrix including free-text data and specimen listing | ||
| + | *** Display or link to all phenotype annotations resulting from publication | ||
| + | ** Requires publication data implementation in OBD by Cartik | ||
| + | ** Requires specimen data implementation in OBD by Cartik | ||
| + | * Possible user testing session in conjunction with RCN meeting at NESCent | ||
| + | |||
===May 2009=== | ===May 2009=== | ||
| − | * | + | * Implement taxonomy-based tree-mapped data perspective |
| + | *Implement appropriate scalable deployment of web application '''Done''' | ||
| + | **Multiple application instances and load balancing '''Done''' | ||
| + | |||
===Release candidate - June 2009=== | ===Release candidate - June 2009=== | ||
| + | *Project team testing | ||
| + | *Bug fixes | ||
| + | *Overall performance evaluation | ||
===Public launch: ASIH meeting, Portland, Oregon - July 22, 2009=== | ===Public launch: ASIH meeting, Portland, Oregon - July 22, 2009=== | ||
| + | |||
| + | ==2010== | ||
| + | ===February 2010=== | ||
| + | * Develop overall site revision plan based on feedback from Knowledgebase Beta 1 interface '''[Done]''' | ||
| + | * Knowledgebase 2.0 site revision mockup testing '''[Done]''' | ||
| + | ** Present mockups to naive users in Eugene, Oregon, February 16-17 ['''Done'''] | ||
| + | ** Revise mockups using testing session user feedback ['''Done'''] | ||
| + | * Develop 2.0-beta implementation plans with feedback from Phenoscape stakeholders ['''Deferred'''] | ||
| + | |||
| + | ===March 2010=== | ||
| + | * Annotation search results pages with editable data filters | ||
| + | * Working taxonomy cladogram data interfaces | ||
| + | * Complete mockups of advanced query interfaces | ||
| + | * Phenoscape meeting at Field Museum, Chicago | ||
| + | ** Conduct user feedback sessions with mockups of forthcoming interfaces, and live testing of implemented pages ['''Done'''] | ||
| + | ** Write-up results of feedback and proposed changes | ||
| + | * Generate permanent unique ID for each publication ['''Done'''] | ||
| + | * Enter unique IDs for publications into Endnote ['''Done'''] | ||
| + | * Data imported KB via Endnote XML files [NOTE: This part was done quite a while ago. However, a slight modification needs to be made to use the new unique IDs for publications] | ||
| + | ** citation information as individual semantic pieces (individual authors, title, journal, etc.) - ['''Deprioritized'''] | ||
| + | ** abstract | ||
| + | ** DOI if available | ||
| + | * Investigate importing previous names of ZFIN genes | ||
| + | * Gene symbol as primary name - [NOTE: This was the old status quo before we decided to the display the complete name of the gene, can easily revert to this.] | ||
| + | |||
| + | ===April 2010=== | ||
| + | * Term search results pages incorporating ontology tree browser | ||
| + | * Publication pages with citation and abstract, links to publications from other data types | ||
| + | * Advanced query interface, data download implementation | ||
| + | * type of mutation/defect producing phenotype result (requires feasibility investigation) | ||
| + | * ZFIN publication ID for each phenotype annotation | ||
| + | * import common names for taxa | ||
| + | |||
| + | ===May 2010=== | ||
| + | * Publication pages with data matrix (table view and downloadable) | ||
| + | * Publication pages with specimens | ||
| + | * Link to taxonomy cladogram interfaces via data on other pages | ||
| + | * Official release of Phenoscape Knowledgebase 2.0-beta | ||
| + | |||
| + | ===June 2010=== | ||
| + | * User testing sessions of Knowledgebase 2.0-beta | ||
| + | * Bug and feedback revisions | ||
| + | |||
| + | ===July 2010=== | ||
| + | * Official release of Phenoscape Knowledgebase 2.0 | ||
| + | |||
| + | [[Category:Roadmaps]] | ||
| + | [[Category:User Interface]] | ||
| + | [[Category:Informatics]] | ||
Latest revision as of 22:51, 9 January 2014
The tool or documentation in this page is obsolete.
Phenoscape web UI development plan.
Contents
2009
February 2009
- Mockup changes to existing interfaces required to incorporate 1/5/09 team feedback on existing interface components
- Taxon search interface Done
- Mockup interface using dummy data within web application - request group feedback
- Front page search interface and results table - may include intermediate results summary page
- Mockup interface using dummy data within web application - request group feedback
- Interface demo and feedback session - DECAP meeting, Feb. 27, 2009 Done
- Present screenshots and mockups
- Possible live demo depending on data service performance progress
- Services should return in no more than 2 seconds
- Evaluate feasibility 2 weeks before meeting
- Mockup publication data interface within web application Done
- Mockup "splashy" search entry page - we should have a more graphically capturing entry gateway for exploring the data content
- One of the following:
- Hierarchical term explorer
- Visual explorer, using schematic drawings ("the prototypical fish")
- Visual explorer using 3D scans of catfish (and eventually zebrafish when done).
- Should explore various prototypes of these ideas using HTML mockups and get feedback from project team
- One of the following:
- Mockup taxonomy-based tree-mapped data perspective
- View taxonomic phenotype annotation results organized by a phylogenetic tree
- Group phenotypes as simplistic union of descendant nodes, rather than ancestral reconstruction
- Use taxonomy as basis for phylogenetic tree
- Develop HTML mockups in web application
March 2009
- Incorporate 1/5/09 team feedback on existing interface components In progress
- Anatomy term search results - reorganize according to sketch
- Gene search results - reorganize according to sketch
- Taxonomic phenotype results page - add Order column for taxonomic grouping
- Present various phenotypic results grouped by custom "character slim" done
- Requires slim development by team members (Wasila, Paula) Done--Pmabee@usd.edu 12:20, 20 March 2009 (EDT)done and service implementation by Cartik
- Taxon search interface
- Design data service schema to be implemented by Cartik
- Implement interface using live data service once developed by Cartik
April 2009
- Implement "splashy" search entry page as defined by mockup work
- Incorporate publication data into user interface
- Incorporate publication links into annotation results displays
- Columns referencing numbers of taxonomic phenotype or mutant phenotype match results will be accompanied by a column including number of publications referencing the search item
- Link from publication count to a publication listing
- Publication listing includes brief citation each of which links to a publication detail page
- Publication detail page(s)
- Full citation information
- Display curator credits
- Display or link to original matrix including free-text data and specimen listing
- Display or link to all phenotype annotations resulting from publication
- Requires publication data implementation in OBD by Cartik
- Requires specimen data implementation in OBD by Cartik
- Incorporate publication links into annotation results displays
- Possible user testing session in conjunction with RCN meeting at NESCent
May 2009
- Implement taxonomy-based tree-mapped data perspective
- Implement appropriate scalable deployment of web application Done
- Multiple application instances and load balancing Done
Release candidate - June 2009
- Project team testing
- Bug fixes
- Overall performance evaluation
Public launch: ASIH meeting, Portland, Oregon - July 22, 2009
2010
February 2010
- Develop overall site revision plan based on feedback from Knowledgebase Beta 1 interface [Done]
- Knowledgebase 2.0 site revision mockup testing [Done]
- Present mockups to naive users in Eugene, Oregon, February 16-17 [Done]
- Revise mockups using testing session user feedback [Done]
- Develop 2.0-beta implementation plans with feedback from Phenoscape stakeholders [Deferred]
March 2010
- Annotation search results pages with editable data filters
- Working taxonomy cladogram data interfaces
- Complete mockups of advanced query interfaces
- Phenoscape meeting at Field Museum, Chicago
- Conduct user feedback sessions with mockups of forthcoming interfaces, and live testing of implemented pages [Done]
- Write-up results of feedback and proposed changes
- Generate permanent unique ID for each publication [Done]
- Enter unique IDs for publications into Endnote [Done]
- Data imported KB via Endnote XML files [NOTE: This part was done quite a while ago. However, a slight modification needs to be made to use the new unique IDs for publications]
- citation information as individual semantic pieces (individual authors, title, journal, etc.) - [Deprioritized]
- abstract
- DOI if available
- Investigate importing previous names of ZFIN genes
- Gene symbol as primary name - [NOTE: This was the old status quo before we decided to the display the complete name of the gene, can easily revert to this.]
April 2010
- Term search results pages incorporating ontology tree browser
- Publication pages with citation and abstract, links to publications from other data types
- Advanced query interface, data download implementation
- type of mutation/defect producing phenotype result (requires feasibility investigation)
- ZFIN publication ID for each phenotype annotation
- import common names for taxa
May 2010
- Publication pages with data matrix (table view and downloadable)
- Publication pages with specimens
- Link to taxonomy cladogram interfaces via data on other pages
- Official release of Phenoscape Knowledgebase 2.0-beta
June 2010
- User testing sessions of Knowledgebase 2.0-beta
- Bug and feedback revisions
July 2010
- Official release of Phenoscape Knowledgebase 2.0
