Difference between revisions of "Phenoscape web UI"
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* Develop overall site revision plan based on feedback from Knowledgebase Beta 1 interface '''[Done]''' | * Develop overall site revision plan based on feedback from Knowledgebase Beta 1 interface '''[Done]''' | ||
* Knowledgebase 2.0 site revision mockup testing '''[Done]''' | * Knowledgebase 2.0 site revision mockup testing '''[Done]''' | ||
− | ** Present mockups to naive users in Eugene, Oregon, February 16-17 ''' | + | ** Present mockups to naive users in Eugene, Oregon, February 16-17 ['''Done'''] |
** Revise mockups using testing session user feedback ['''Done'''] | ** Revise mockups using testing session user feedback ['''Done'''] | ||
− | * Develop 2.0-beta implementation plans with feedback from Phenoscape stakeholders [deferred to March] | + | * Develop 2.0-beta implementation plans with feedback from Phenoscape stakeholders ['''deferred to March'''] |
===March 2010=== | ===March 2010=== |
Revision as of 22:27, 20 March 2010
Phenoscape web UI development plan.
Contents
2009
February 2009
- Mockup changes to existing interfaces required to incorporate 1/5/09 team feedback on existing interface components
- Taxon search interface Done
- Mockup interface using dummy data within web application - request group feedback
- Front page search interface and results table - may include intermediate results summary page
- Mockup interface using dummy data within web application - request group feedback
- Interface demo and feedback session - DECAP meeting, Feb. 27, 2009 Done
- Present screenshots and mockups
- Possible live demo depending on data service performance progress
- Services should return in no more than 2 seconds
- Evaluate feasibility 2 weeks before meeting
- Mockup publication data interface within web application Done
- Mockup "splashy" search entry page - we should have a more graphically capturing entry gateway for exploring the data content
- One of the following:
- Hierarchical term explorer
- Visual explorer, using schematic drawings ("the prototypical fish")
- Visual explorer using 3D scans of catfish (and eventually zebrafish when done).
- Should explore various prototypes of these ideas using HTML mockups and get feedback from project team
- One of the following:
- Mockup taxonomy-based tree-mapped data perspective
- View taxonomic phenotype annotation results organized by a phylogenetic tree
- Group phenotypes as simplistic union of descendant nodes, rather than ancestral reconstruction
- Use taxonomy as basis for phylogenetic tree
- Develop HTML mockups in web application
March 2009
- Incorporate 1/5/09 team feedback on existing interface components In progress
- Anatomy term search results - reorganize according to sketch
- Gene search results - reorganize according to sketch
- Taxonomic phenotype results page - add Order column for taxonomic grouping
- Present various phenotypic results grouped by custom "character slim" done
- Requires slim development by team members (Wasila, Paula) Done--Pmabee@usd.edu 12:20, 20 March 2009 (EDT)done and service implementation by Cartik
- Taxon search interface
- Design data service schema to be implemented by Cartik
- Implement interface using live data service once developed by Cartik
April 2009
- Implement "splashy" search entry page as defined by mockup work
- Incorporate publication data into user interface
- Incorporate publication links into annotation results displays
- Columns referencing numbers of taxonomic phenotype or mutant phenotype match results will be accompanied by a column including number of publications referencing the search item
- Link from publication count to a publication listing
- Publication listing includes brief citation each of which links to a publication detail page
- Publication detail page(s)
- Full citation information
- Display curator credits
- Display or link to original matrix including free-text data and specimen listing
- Display or link to all phenotype annotations resulting from publication
- Requires publication data implementation in OBD by Cartik
- Requires specimen data implementation in OBD by Cartik
- Incorporate publication links into annotation results displays
- Possible user testing session in conjunction with RCN meeting at NESCent
May 2009
- Implement taxonomy-based tree-mapped data perspective
- Implement appropriate scalable deployment of web application Done
- Multiple application instances and load balancing Done
Release candidate - June 2009
- Project team testing
- Bug fixes
- Overall performance evaluation
Public launch: ASIH meeting, Portland, Oregon - July 22, 2009
2010
February 2010
- Develop overall site revision plan based on feedback from Knowledgebase Beta 1 interface [Done]
- Knowledgebase 2.0 site revision mockup testing [Done]
- Present mockups to naive users in Eugene, Oregon, February 16-17 [Done]
- Revise mockups using testing session user feedback [Done]
- Develop 2.0-beta implementation plans with feedback from Phenoscape stakeholders [deferred to March]
March 2010
- Annotation search results pages with editable data filters
- Working taxonomy cladogram data interfaces
- Complete mockups of advanced query interfaces
- Phenoscape meeting at Field Museum, Chicago
- Conduct user feedback sessions with mockups of forthcoming interfaces, and live testing of implemented pages [Done]
- Write-up results of feedback and proposed changes
- Generate permanent unique ID for each publication [Done]
- Enter unique IDs for publications into Endnote [Done]
- Data imported KB via Endnote XML files [NOTE: This part was done quite a while ago. However, a slight modification needs to be made to use the new unique IDs for publications]
- citation information as individual semantic pieces (individual authors, title, journal, etc.) - [deprioritized]
- abstract
- DOI if available
- Investigate importing previous names of ZFIN genes
- Gene symbol as primary name - [NOTE: This was the old status quo before we decided to the display the complete name of the gene, can easily revert to this.]
April 2010
- Term search results pages incorporating ontology tree browser
- Publication pages with citation and abstract, links to publications from other data types
- Advanced query interface, data download implementation
- type of mutation/defect producing phenotype result (requires feasibility investigation)
- ZFIN publication ID for each phenotype annotation
- import common names for taxa
May 2010
- Publication pages with data matrix (table view and downloadable)
- Publication pages with specimens
- Link to taxonomy cladogram interfaces via data on other pages
- Official release of Phenoscape Knowledgebase 2.0-beta
June 2010
- User testing sessions of Knowledgebase 2.0-beta
- Bug and feedback revisions
July 2010
- Official release of Phenoscape Knowledgebase 2.0