Difference between revisions of "Needs Analysis Workshop/Prioritization"

From phenoscape
(Prioritization)
(Prioritization)
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* Correlation matrix of traits
 
* Correlation matrix of traits
 
* Downloadable reports of query results (e.g. candidate genes; comparative phenotypic data)
 
* Downloadable reports of query results (e.g. candidate genes; comparative phenotypic data)
* Identifying clades which traits vary
+
* Identifying clades which traits vary (quick retrieval of character state distributions)
 
* Phenotypic BLAST to discover similar phenotypes and similar OTUs
 
* Phenotypic BLAST to discover similar phenotypes and similar OTUs
 
* Discovery of genetic or evolutionary modules
 
* Discovery of genetic or evolutionary modules

Revision as of 18:16, 25 September 2007

Additional data types and query constraints

  • Other data types or dimensions we haven't looked at
    • Time: e.g., developmental time-series
    • Geography
  • Abilities to restrict traits by
    • high-level character modules
    • gene
    • GO
    • location
    • developmental stage
    • availability of sufficient data

Prioritization

  • Character mapping on trees
  • Correlation matrix of traits
  • Downloadable reports of query results (e.g. candidate genes; comparative phenotypic data)
  • Identifying clades which traits vary (quick retrieval of character state distributions)
  • Phenotypic BLAST to discover similar phenotypes and similar OTUs
  • Discovery of genetic or evolutionary modules
  • Integrating genetic data

Visualizations:

  • body map
  • filtering options
  • visualizing the ontology
  • external data types, link-out to NCBI