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  • Anatomy Tree Display
    ...revision puts the ontology tree on the left as the primary browsing tool. Data for the selected term appears in the tabbed panels to the right. Possible further enhancement to page capabilities - redisplay data on a quality tree. The included results would be somewhat different.
    4 KB (563 words) - 16:24, 1 February 2010
  • Transitive homology
    ...aking this strong assumption? We can explore this with existing phenoscape data.
    4 KB (642 words) - 02:29, 18 March 2010
  • Change And Correlation
    === Slide 5: A tree with negative data and a detected change ===
    8 KB (1,097 words) - 20:55, 29 April 2010
  • FMNH 2010 Workshop
    ...ating morphological data across studies and with genetic and developmental data. The user interface and tools are being designed to address the general ne
    3 KB (384 words) - 13:46, 4 May 2010
  • Knowledgebase Reports
    ...It contains the latest public versions of all ontologies at the time the data were loaded, with the exception of PATO (it currently contains an [http://w * [http://kb.phenoscape.org/OBD-WS/timestamp/ Date on which these data were loaded]
    32 KB (4,884 words) - 15:32, 3 May 2012
  • Reasoning over homology statements
    ...nd inferences laid out here have since been refined and adapted to an OWL2 data model. A manuscript describing competency questions, implementation, and as loss of efficiency due to storing redundant data).
    33 KB (5,448 words) - 22:33, 25 May 2018
  • EQ shortcuts (temporary)
    ...be used until better EQ entry interfaces are available in Phenex. The KB data loader will watch for and correctly interpret each of these. ...d X" qualities. While these qualities technically compare to "normal", the data loader will replace them with the correct quality.
    1 KB (163 words) - 02:07, 26 October 2010
  • Knowledgebase:File formats (for data downloads)
    '''File formats (for data downloads)'''
    263 bytes (36 words) - 19:55, 19 March 2012
  • Matching Phenotypes
    ...ut-off values for test statistic values of profile comparisons in the real data. For example
    16 KB (2,382 words) - 17:40, 16 July 2012
  • Anatomy Ontology Conf calls
    ** "bulk" update grabs all chordate data; needs review by curator; would have list of species with invalid parents ...ning that every term in ZFA has a corresponding term in TAO; links to gene data.
    31 KB (4,773 words) - 20:15, 13 March 2012
  • Collaborative Phenotype Annotation
    * import matrix data from file source (usually NEXUS) ** ''Supported. Can import character and state labels, matrix data from a NEXUS file. This is a one-time import before editing in MX.''
    12 KB (1,734 words) - 22:44, 18 September 2011
  • Project Plan
    ...rature, will be integrated in the knowledgebase with genetic and phenotype data from three vertebrate model organisms: zebrafish (Danio rerio), African cl ...both extinct and extant vertebrates will be combined with mutant phenotype data from three vertebrate genetic models: zebrafish (Danio rerio), frog (Xenopu
    9 KB (1,278 words) - 17:11, 28 August 2012
  • Term Definitions and References
    ...nitions facilitate the consistent use of a term in annotation of different data types by curators. We follow the convention that each term should have a te
    5 KB (707 words) - 16:42, 9 January 2012
  • Semantics of phenotype annotations
    In Phenoscape data annotation, we typically model a phenotype as a class expression describing ...mes (an order), but would be the most appropriate choice for species-level data.
    3 KB (389 words) - 01:46, 29 August 2011
  • Linking Evolution to Genomics Using Phenotype Ontologies
    ...o integrate developmental genetic and comparative morphological/anatomical data. ...database with its web-interface, together with the extended ontologies and data curation tools, will allow researchers to ask novel questions about the gen
    6 KB (922 words) - 18:05, 2 November 2011
  • WebHints
    ...which meet the query criteria. These publications contain the evolutionary data matrices annotated by Phenoscape.
    7 KB (956 words) - 18:39, 19 March 2012
  • KB-OWL
    This page describes the data model, data loading process, and query methods being developed for a new version of the ==Data model==
    4 KB (562 words) - 22:47, 9 January 2014
  • Software
    ...quirements for scalability, reasoning expressivity, and support for linked data standards, we are developing a our Knowledgebase infrastructure using the R ...or semantically annotated character matrix files. This is the evolutionary data content for the Phenoscape KB. NeXML.
    9 KB (1,151 words) - 00:04, 10 December 2019
  • KB data integrity checks
    This page documents data integrity checks that would be useful to implement in a testing framework r = Data =
    862 bytes (119 words) - 21:41, 17 November 2011
  • Phenoscape 1 Curated Publications
    ...omorph fishes: a total evidence approach using molecular and morphological data." Biochemical Systematics and Ecology 28: 319-350.
    11 KB (1,467 words) - 20:07, 11 November 2011
  • To Edit is Divine
    ** Do we need a separate wiki page with a description of our data in EoL?
    2 KB (317 words) - 20:44, 19 April 2012
  • Curation workflow
    ...ataset that a user should know. Generally, this includes notes on how the data was modified from the publication. For example, ....g., Information recorded here consists of modifications made to published data based on author communication, 10/12/2013).
    6 KB (1,057 words) - 19:33, 19 December 2012
  • Ontology workflow
    ...ecause they facilitate consistent use of a term in annotation of disparate data types by different curators. Ontologies follow the convention that each te
    5 KB (862 words) - 19:20, 18 December 2012
  • Adding Taxa to PaleoDB
    ...should have received training from the authorized person supervising your data entry. Note, as mentioned below, that names entered into the PaleDB do not ...dded since the last time the VTO was updated from the PaleoDB. In the ‘Data entry’ column under the heading ‘Basic steps’, click the ‘Add/edit
    6 KB (977 words) - 18:27, 16 July 2012
  • API
    #REDIRECT [[Data Services]]
    27 bytes (3 words) - 01:05, 7 May 2012
  • Knowledgebase tutorial
    ...ws, loaches, characins, and knifefishes), as well as developmental genetic data imported from [http://zfin.org/ ZFIN]. ...f interest, such as the “basihyal bone”. The KB consists of structured data in the form of related ontology terms. So the search field is used to find
    14 KB (2,237 words) - 19:06, 29 June 2016
  • Issue trackers
    ==Provisional term (ORB) management web interface, data reports== https://github.com/phenoscape/phenoscape-data/issues
    655 bytes (95 words) - 21:37, 13 February 2013
  • Bigdata
    ...ia the [[KB build process]] into a [[KB_build_process#RDF_data_model|graph data model]]. ...ass descriptions which share semantics to a greater degree than with other data items. For example, a gene may be associated with a set of phenotypic expre
    6 KB (898 words) - 18:17, 27 July 2015
  • Data Availability
    #REDIRECT [[Phenoscape data policy]]
    36 bytes (4 words) - 23:10, 29 October 2014
  • Postdoc2016
    ...sted in analyzing genomic and developmental data in relation to phenotypic data, with a focus on the vertebrate fin/limb. ...n). These data present a tremendous opportunity for integration with other data types to address questions about the evolution of phenotype.
    3 KB (444 words) - 18:13, 12 May 2016
  • Resources for curators
    #REDIRECT [[Resources for Data Contributors]]
    45 bytes (5 words) - 21:18, 3 June 2016

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