Links

Curation

• Phenoscape Guide to Character Annotation

Anatomy Ontologies

• Amniote Anatomy Ontology (AMAO)
• Amphibian Anatomy Ontology (AAO)
• Common Anatomy Reference Ontology (CARO)
• Mouse Adult Gross Anatomy (MA)
• Teleost Anatomy Ontology (TAO)
• Uber Anatomy Ontology (UBERON)
• Vertebrate Skeletal Anatomy Ontology (VSAO)
• Xenopus Anatomy Ontology
• Zebrafish Anatomy and Development (ZFA)
• Phenotype and Trait Ontology (PATO)

Anatomy mailing list Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list:

• Subscribe or view list archives here: obo-anatomy mailing list
• View obo-anatomy list archives

Taxonomy Ontologies

• Teleost Taxonomy Ontology (TTO)
• Vertebrate Taxonomy Ontology (VTO)

Ontology Resources

• Ontology browsing and visualization at NCBO
• Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO
• OBD Phenotype file formats - Includes standards and schemas for PhenoSyntax and PhenoXML
• Open Biomedical Data (OBD) data model, API, and other downloads

Fish resources

• Zebrafish Information Network (ZFIN)
• DeepFin
• All Catfish Species
• Catalog of Fishes
• FishBase

Morphology image database resources

• Morphbank
• MorphoBank
• Digimorph
• Morphster

Software

• Phenex
• OBO-Edit
• ORB term request prototype

NCBO BioPortal support requests

Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect):

• BioPortal 2.0 Tracker at the BMIR GForge installation
• Support email: support@bioontology.org

NCBO BioPortal User Group:

We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting.

• A Basecamp-based BioPortal project management site (login required) has User Group meeting presentations and other information.