Difference between revisions of "Links"

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===Curation===
  
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==Bibliography==
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* [[Guide_to_Character_Annotation | Phenoscape Guide to Character Annotation]]
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===Anatomy Ontologies===
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* [http://phenoscape.org/wiki/Ontologies#Amniote_Anatomy_Ontology_.28AMAO.29 Amniote Anatomy Ontology (AMAO)]
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* [http://phenoscape.org/wiki/Ontologies#Amphibian_Anatomy_Ontology_.28AAO.29 Amphibian Anatomy Ontology (AAO)]
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* [http://obofoundry.org/cgi-bin/detail.cgi?caro Common Anatomy Reference Ontology (CARO)]
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* [http://phenoscape.org/wiki/Ontologies#Mouse_Adult_Gross_Anatomy_.28MA.29 Mouse Adult Gross Anatomy (MA)]
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* [http://phenoscape.org/wiki/Ontologies#Teleost_Anatomy_Ontology_.28TAO.29 Teleost Anatomy Ontology (TAO)]
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* [http://obofoundry.org/cgi-bin/detail.cgi?id=uberon Uber Anatomy Ontology (UBERON)]
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* [http://phenoscape.org/wiki/Ontologies#Vertebrate_Musculoskeletal_Anatomy_Ontology_.28VAO.29 Vertebrate Skeletal Anatomy Ontology (VSAO)]
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* [http://phenoscape.org/wiki/Ontologies#Xenopus_Anatomy_Ontology_.28XAO.29 Xenopus Anatomy Ontology]
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* [http://phenoscape.org/wiki/Ontologies#Zebrafish_Anatomical_Ontology_.28ZFA.29 Zebrafish Anatomy and Development (ZFA)]
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* [http://obofoundry.org/cgi-bin/detail.cgi?id=quality Phenotype and Trait Ontology (PATO)]
  
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* ''please add here ...''
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===Anatomy mailing list===
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Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list:
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* Subscribe or view list archives here: [http://lists.sourceforge.net/lists/listinfo/obo-anatomy obo-anatomy mailing list]
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* View [http://sourceforge.net/mailarchive/forum.php?forum_name=obo-anatomy obo-anatomy list archives]
  
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==Local Links==
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===Taxonomy Ontologies===
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* [[Teleost Taxonomy Ontology]] (TTO)
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* [[Ontologies#Vertebrate_Taxonomy_Ontology_.28VTO.29| Vertebrate Taxonomy Ontology]] (VTO)
  
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; Hotel
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===Ontology Resources===
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* [http://www.millenniumhotels.com/MCIL.nsf/LU_HOTELDOC/113$$HotelDescription?OpenDocument Millenium Hotel]
 
  
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; Dining & Entertainment
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* [http://www.bioontology.org/ncbo/faces/pages/ontology_list.xhtml Ontology browsing and visualization at NCBO]
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* [http://www.ninthst.com/ Ninth Street] (right across from NESCent)
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* [http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO]
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* [http://www.fruitfly.org/~cjm/obd/formats.html OBD Phenotype file formats] - Includes standards and schemas for PhenoSyntax and PhenoXML
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* [http://www.berkeleybop.org/obd/ Open Biomedical Data (OBD) data model, API, and other downloads]
  
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; Historic
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===Fish resources===
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* [http://www.owdna.org/mill.htm Erwin Mills]
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* [http://www.zfin.org Zebrafish Information Network] (ZFIN)
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* [http://www.deepfin.org/ DeepFin]
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* [http://silurus.acnatsci.org/ All Catfish Species]
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* [http://www.calacademy.org/RESEARCH/ichthyology/catalog/fishcatsearch.html Catalog of Fishes]
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* [http://fishbase.org/ FishBase]
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===Morphology image database resources===
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* [https://www.flickr.com/photos/109282112@N02/ Phenoscape flickr account]
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* [http://www.morphbank.net/ Morphbank]
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* [http://morphobank.geongrid.org/ MorphoBank]
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* [http://digimorph.org/ Digimorph]
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* [http://aug.csres.utexas.edu/PhylogenyWiki/ Morphster]
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===Software===
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* [[Phenex]]
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* [http://oboedit.org/ OBO-Edit]
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*[[ORB term request prototype]]
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===NCBO BioPortal support requests===
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Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect):
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* [https://bmir-gforge.stanford.edu/gf/project/bioportal_core/tracker/ BioPortal 2.0 Tracker] at the BMIR GForge installation
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* Support email: [mailto:support%40bioontology%2eorg support@bioontology.org]
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'''NCBO BioPortal User Group:'''
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We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting.
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* A Basecamp-based [https://ncboprojects.updatelog.com/projects/1487611/project/log BioPortal project management site] (login required) has User Group meeting presentations and other information.
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[[Category:Help]]

Latest revision as of 19:39, 24 May 2018

Curation

Anatomy Ontologies

Anatomy mailing list

Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list:

Taxonomy Ontologies

Ontology Resources

Fish resources

Morphology image database resources

Software

NCBO BioPortal support requests

Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect):

NCBO BioPortal User Group:

We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting.

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