Difference between revisions of "Links"

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===Curation===
  
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==Bibliography==
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* [[Guide_to_Character_Annotation | Phenoscape Guide to Character Annotation]]
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===Anatomy Ontologies===
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* [http://phenoscape.org/wiki/Ontologies#Amniote_Anatomy_Ontology_.28AMAO.29 Amniote Anatomy Ontology (AMAO)]
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* [http://phenoscape.org/wiki/Ontologies#Amphibian_Anatomy_Ontology_.28AAO.29 Amphibian Anatomy Ontology (AAO)]
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* [http://obofoundry.org/cgi-bin/detail.cgi?caro Common Anatomy Reference Ontology (CARO)]
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* [http://phenoscape.org/wiki/Ontologies#Mouse_Adult_Gross_Anatomy_.28MA.29 Mouse Adult Gross Anatomy (MA)]
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* [http://phenoscape.org/wiki/Ontologies#Teleost_Anatomy_Ontology_.28TAO.29 Teleost Anatomy Ontology (TAO)]
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* [http://obofoundry.org/cgi-bin/detail.cgi?id=uberon Uber Anatomy Ontology (UBERON)]
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* [http://phenoscape.org/wiki/Ontologies#Vertebrate_Musculoskeletal_Anatomy_Ontology_.28VAO.29 Vertebrate Skeletal Anatomy Ontology (VSAO)]
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* [http://phenoscape.org/wiki/Ontologies#Xenopus_Anatomy_Ontology_.28XAO.29 Xenopus Anatomy Ontology]
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* [http://phenoscape.org/wiki/Ontologies#Zebrafish_Anatomical_Ontology_.28ZFA.29 Zebrafish Anatomy and Development (ZFA)]
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* [http://obofoundry.org/cgi-bin/detail.cgi?id=quality Phenotype and Trait Ontology (PATO)]
  
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===Reprints===
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===Anatomy mailing list===
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Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list:
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* Subscribe or view list archives here: [http://lists.sourceforge.net/lists/listinfo/obo-anatomy obo-anatomy mailing list]
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* View [http://sourceforge.net/mailarchive/forum.php?forum_name=obo-anatomy obo-anatomy list archives]
  
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* Mabee PM et al (2007). [[Media:TREE Mabee.pdf|Phenotype ontologies: the bridge between genomics and evolution.]] Trends Ecol Evol <cite>mabee2007</cite>
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===Taxonomy Ontologies===
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* [[Teleost Taxonomy Ontology]] (TTO)
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* [[Ontologies#Vertebrate_Taxonomy_Ontology_.28VTO.29| Vertebrate Taxonomy Ontology]] (VTO)
  
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===References===
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===Ontology Resources===
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<biblio>
 
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#mabee2007 pmid=17416439 <br/>[[Media:TREE Mabee.pdf|Reprint]]
 
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</biblio>
 
  
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==Local Links==
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* [http://www.bioontology.org/ncbo/faces/pages/ontology_list.xhtml Ontology browsing and visualization at NCBO]
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* [http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO]
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* [http://www.fruitfly.org/~cjm/obd/formats.html OBD Phenotype file formats] - Includes standards and schemas for PhenoSyntax and PhenoXML
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* [http://www.berkeleybop.org/obd/ Open Biomedical Data (OBD) data model, API, and other downloads]
  
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; Hotel
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===Fish resources===
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* [http://www.millenniumhotels.com/MCIL.nsf/LU_HOTELDOC/113$$HotelDescription?OpenDocument Millenium Hotel]
 
  
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; Dining & Entertainment
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* [http://www.zfin.org Zebrafish Information Network] (ZFIN)
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* [http://www.ninthst.com/ Ninth Street] (right across from NESCent)
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* [http://www.deepfin.org/ DeepFin]
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* [http://silurus.acnatsci.org/ All Catfish Species]
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* [http://www.calacademy.org/RESEARCH/ichthyology/catalog/fishcatsearch.html Catalog of Fishes]
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* [http://fishbase.org/ FishBase]
  
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; Historic
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===Morphology image database resources===
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* [http://www.owdna.org/mill.htm Erwin Mills]
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* [https://www.flickr.com/photos/109282112@N02/ Phenoscape flickr account]
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* [http://www.morphbank.net/ Morphbank]
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* [http://morphobank.geongrid.org/ MorphoBank]
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* [http://digimorph.org/ Digimorph]
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* [http://aug.csres.utexas.edu/PhylogenyWiki/ Morphster]
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===Software===
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* [[Phenex]]
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* [http://oboedit.org/ OBO-Edit]
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*[[ORB term request prototype]]
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===NCBO BioPortal support requests===
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Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect):
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* [https://bmir-gforge.stanford.edu/gf/project/bioportal_core/tracker/ BioPortal 2.0 Tracker] at the BMIR GForge installation
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* Support email: [mailto:support%40bioontology%2eorg support&#64;bioontology&#46;org]
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'''NCBO BioPortal User Group:'''
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We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting.
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* A Basecamp-based [https://ncboprojects.updatelog.com/projects/1487611/project/log BioPortal project management site] (login required) has User Group meeting presentations and other information.
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[[Category:Help]]

Latest revision as of 19:39, 24 May 2018

Curation

Anatomy Ontologies

Anatomy mailing list

Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list:

Taxonomy Ontologies

Ontology Resources

Fish resources

Morphology image database resources

Software

NCBO BioPortal support requests

Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect):

NCBO BioPortal User Group:

We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting.

Retrieved from "https://wiki.phenoscape.org/wg/phenoscape/index.php?title=Links&oldid=11991"