Difference between revisions of "Links"

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-===Ontologies===
+===Curation===
-'''[http://www.bioontology.org National Center for Biomedical Ontology]'''
+* [[Guide_to_Character_Annotation | Phenoscape Guide to Character Annotation]]
-* [http://www.bioontology.org/ncbo/faces/pages/ontology_list.xhtml Ontologies from NCBO]
+===Anatomy Ontologies===
-* [http://obofoundry.org/cgi-bin/detail.cgi?id=zebrafish_anatomy&title=Zebrafish%20anatomy%20and%20development Ontology of Zebrafish Anatomy and Development]
+* [http://phenoscape.org/wiki/Ontologies#Amniote_Anatomy_Ontology_.28AMAO.29 Amniote Anatomy Ontology (AMAO)]
-* [http://obofoundry.org/cgi-bin/detail.cgi?caro Common Anatomy Reference Ontology (CARO)] ([http://purl.org/obo/owl/CARO also available in OWL format])
+* [http://phenoscape.org/wiki/Ontologies#Amphibian_Anatomy_Ontology_.28AAO.29 Amphibian Anatomy Ontology (AAO)]
+* [http://obofoundry.org/cgi-bin/detail.cgi?caro Common Anatomy Reference Ontology (CARO)]
+* [http://phenoscape.org/wiki/Ontologies#Mouse_Adult_Gross_Anatomy_.28MA.29 Mouse Adult Gross Anatomy (MA)]
+* [http://phenoscape.org/wiki/Ontologies#Teleost_Anatomy_Ontology_.28TAO.29 Teleost Anatomy Ontology (TAO)]
+* [http://obofoundry.org/cgi-bin/detail.cgi?id=uberon Uber Anatomy Ontology (UBERON)]
+* [http://phenoscape.org/wiki/Ontologies#Vertebrate_Musculoskeletal_Anatomy_Ontology_.28VAO.29 Vertebrate Skeletal Anatomy Ontology (VSAO)]
+* [http://phenoscape.org/wiki/Ontologies#Xenopus_Anatomy_Ontology_.28XAO.29 Xenopus Anatomy Ontology]
+* [http://phenoscape.org/wiki/Ontologies#Zebrafish_Anatomical_Ontology_.28ZFA.29 Zebrafish Anatomy and Development (ZFA)]
+* [http://obofoundry.org/cgi-bin/detail.cgi?id=quality Phenotype and Trait Ontology (PATO)]
+===Anatomy mailing list===
+Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list:
+* Subscribe or view list archives here: [http://lists.sourceforge.net/lists/listinfo/obo-anatomy obo-anatomy mailing list]
+* View [http://sourceforge.net/mailarchive/forum.php?forum_name=obo-anatomy obo-anatomy list archives]
+===Taxonomy Ontologies===
+* [[Teleost Taxonomy Ontology]] (TTO)
+* [[Ontologies#Vertebrate_Taxonomy_Ontology_.28VTO.29| Vertebrate Taxonomy Ontology]] (VTO)
+===Ontology Resources===
+* [http://www.bioontology.org/ncbo/faces/pages/ontology_list.xhtml Ontology browsing and visualization at NCBO]
 * [http://www.bioontology.org/wiki/index.php/CL:Aligning_species-specific_anatomy_ontologies_with_CL Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO]
 * [http://www.fruitfly.org/~cjm/obd/formats.html OBD Phenotype file formats] - Includes standards and schemas for PhenoSyntax and PhenoXML
@@ Line 14: / Line 35: @@
 * [http://www.deepfin.org/ DeepFin]
 * [http://silurus.acnatsci.org/ All Catfish Species]
-* [http://www.digitalfishlibrary.org/ Digital Fish Library]
 * [http://www.calacademy.org/RESEARCH/ichthyology/catalog/fishcatsearch.html Catalog of Fishes]
 * [http://fishbase.org/ FishBase]
 ===Morphology image database resources===
+* [https://www.flickr.com/photos/109282112@N02/ Phenoscape flickr account]
 * [http://www.morphbank.net/ Morphbank]
 * [http://morphobank.geongrid.org/ MorphoBank]
@@ Line 27: / Line 47: @@
 ===Software===
-* [http://www.phenote.org Phenote]
+* [[Phenex]]
 * [http://oboedit.org/ OBO-Edit]
+*[[ORB term request prototype]]
 ===NCBO BioPortal support requests===
@@ Line 43: / Line 64: @@
-==Project presentations==
-See the [[Publications and Posters|publications page]] for manuscripts and posters arising from the project.
-==Bibliography==
-We also maintain a list of references on [http://www.connotea.org Connotea], using the tag "[http://www.connotea.org/tag/phenoscape phenoscape]". This list may be more up-to-date than the bibliography below. Anyone can easily recommend references (and in fact any site or resource) to us simply by tagging it with "phenoscape" in Connotea.
-<biblio>
-#rosen1974 Rosen DE. 1974. ''[http://hdl.handle.net/2246/606 Phylogeny and zoogeography of salmoniform fishes and relationships of Lepidogalaxias salamandroides].'' Bulletin of the American Museum of Natural History 153:267-325.
-#finkfink1981 Fink SV, Fink WL. 1981. ''Interrelationships of the ostariophysan fishes (Teleostei)''. Zoological Journal of the Linnean Society 72(4):297-353.
-#finkfink1997 Fink, S.V. and W.L. Fink. 1997. Interrelationships of the Ostariophysi. In: ''Interrelationships of Fishes'', M. Stiassney, L. Parenti and D. Johnson (Eds). Academic Press, 209-249.
-#schulz2007 pmid=17448242
-</biblio>
 [[Category:Help]]

Difference between revisions of "Links"

Latest revision as of 19:39, 24 May 2018

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