Difference between revisions of "Links"
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* [http://phenoscape.org/wiki/Ontologies#Zebrafish_Anatomical_Ontology_.28ZFA.29 Zebrafish Anatomy and Development (ZFA)] | * [http://phenoscape.org/wiki/Ontologies#Zebrafish_Anatomical_Ontology_.28ZFA.29 Zebrafish Anatomy and Development (ZFA)] | ||
* [http://obofoundry.org/cgi-bin/detail.cgi?id=quality Phenotype and Trait Ontology (PATO)] | * [http://obofoundry.org/cgi-bin/detail.cgi?id=quality Phenotype and Trait Ontology (PATO)] | ||
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| + | ===Anatomy mailing list=== | ||
Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list: | Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list: | ||
* Subscribe or view list archives here: [http://lists.sourceforge.net/lists/listinfo/obo-anatomy obo-anatomy mailing list] | * Subscribe or view list archives here: [http://lists.sourceforge.net/lists/listinfo/obo-anatomy obo-anatomy mailing list] | ||
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===Taxonomy Ontologies=== | ===Taxonomy Ontologies=== | ||
* [[Teleost Taxonomy Ontology]] (TTO) | * [[Teleost Taxonomy Ontology]] (TTO) | ||
| − | * [[Ontologies#Vertebrate_Taxonomy_Ontology_.28VTO.29| Vertebrate Taxonomy Ontology]] | + | * [[Ontologies#Vertebrate_Taxonomy_Ontology_.28VTO.29| Vertebrate Taxonomy Ontology]] (VTO) |
===Ontology Resources=== | ===Ontology Resources=== | ||
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===Morphology image database resources=== | ===Morphology image database resources=== | ||
| − | + | * [https://www.flickr.com/photos/109282112@N02/ Phenoscape flickr account] | |
* [http://www.morphbank.net/ Morphbank] | * [http://www.morphbank.net/ Morphbank] | ||
* [http://morphobank.geongrid.org/ MorphoBank] | * [http://morphobank.geongrid.org/ MorphoBank] | ||
Latest revision as of 19:39, 24 May 2018
Contents
Curation
Anatomy Ontologies
- Amniote Anatomy Ontology (AMAO)
- Amphibian Anatomy Ontology (AAO)
- Common Anatomy Reference Ontology (CARO)
- Mouse Adult Gross Anatomy (MA)
- Teleost Anatomy Ontology (TAO)
- Uber Anatomy Ontology (UBERON)
- Vertebrate Skeletal Anatomy Ontology (VSAO)
- Xenopus Anatomy Ontology
- Zebrafish Anatomy and Development (ZFA)
- Phenotype and Trait Ontology (PATO)
Anatomy mailing list
Discussion of vertebrate and general anatomy issues are posted to the obo-anatomy list:
- Subscribe or view list archives here: obo-anatomy mailing list
- View obo-anatomy list archives
Taxonomy Ontologies
Ontology Resources
- Ontology browsing and visualization at NCBO
- Maintaining inter-ontology relations between species specific anatomy ontologies and CL/GO/CARO
- OBD Phenotype file formats - Includes standards and schemas for PhenoSyntax and PhenoXML
- Open Biomedical Data (OBD) data model, API, and other downloads
Fish resources
Morphology image database resources
Software
NCBO BioPortal support requests
Support (for issues) and feature requests for the NCBO BioPortal can be submitted through the following venues (according to Benjamin Dai, BioPortal Lead Software Architect):
- BioPortal 2.0 Tracker at the BMIR GForge installation
- Support email: support@bioontology.org
NCBO BioPortal User Group:
We are a (voting) member of the BioPortal User Group. The group has monthly teleconferences where new features are being discusses and subsequently prioritized through survey-voting.
- A Basecamp-based BioPortal project management site (login required) has User Group meeting presentations and other information.
