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• Needs Analysis Workshop/Semantics Breakout
  HL – might get data on a mutant that indicate that the red dot changed position PM – would be nice to have a representation that let you see data in two different ways
  7 KB (1,183 words) - 20:04, 18 January 2008
• Training and Workshops
  ...ets of their interest that took advantage and promoted reuse of the KB’s data and services. ...oevolutionary patterns. A similarly rich set of tools, such as ontologies, data annotation models, and machine reasoners, have also recently been introduce
  18 KB (2,453 words) - 00:15, 10 December 2019
• Publications and Posters
  * Data curation: Dahdul et al. (2018), Dahdul et al. (2015), Cui et al. (2015), Ar * Data modeling, reasoning & ontologies: Mabee et al. (2020), Manda et al. (2016)
  52 KB (6,895 words) - 22:42, 17 November 2023
• EQ Editor requirements draft 1
  ...ode phenotypic data from an existing publication into the EQ format. This data consists of descriptions of character state values for corresponding specie ===Data Model===
  7 KB (1,124 words) - 23:41, 10 January 2009
• Hypodigm
  ...otations to specimens within publications has been at issue. Our existing data model held all phenotype annotations at the level of particular specimens. Our discussion at the Biocuration meeting led to a new data model in which all phenotype annotations are expressed as properties of spe
  2 KB (393 words) - 21:55, 22 November 2008
• Knowledgebase
  ...logical, spatial, and other requisite domain knowledge, the KB links these data to phenotypes reported in genetic perturbation studies for pertinent model For query answering the KB uses machine reasoning to match data by its semantics. The API also gives access to other machine reasoning-base
  1 KB (186 words) - 19:16, 26 September 2017
• Ontology Request Broker
  In the process of annotating data files, curators may encounter terms in the data that have not yet been added to an appropriate ontology. Requesting a new o ...enoscape ontology editors can review the requested terms, independently of data annotation work. After adding a term to an appropriate ontology, or decidin
  3 KB (457 words) - 18:07, 13 November 2015
• Phenoscape KB
  ..., and software infrastructure and services, bringing together evolutionary data matrices annotated by Phenoscape curators, model organism phenotype and gen ==Data sources==
  9 KB (1,386 words) - 13:53, 20 March 2014
• Individual-based taxonomy
  The [http://www.evolutionaryontology.org/cdao Comparative Data Analysis Ontology] (CDAO) includes classes and properties for modeling phyl
  2 KB (350 words) - 20:31, 8 July 2013
• Absence Phenotypes in OWL
  ...expressions are not equivalent but describe different aspects of the same data model.
  6 KB (853 words) - 20:39, 18 October 2013
• Needs Analysis Workshop/Summary
  ...to enable synthetic research that takes full advantage of the accumulated data in each of these fields. We hoped to identify driving biological questions ...ife history, adaptation, and evolutionary time with phenotypic and genetic data to elucidate mechanisms of phenotypic change [[Needs Analysis Workshop/Brea
  10 KB (1,445 words) - 05:23, 10 September 2008
• Data Jamboree 1
  ...olution to Genomics Using Phenotype Ontologies:'''<br/>'''First Morphology Data Jamboree'''</big><br/><br/>A workshop hosted by the National Evolutionary S ...ct personnel to work one-on-one on entering published systematic character data.
  9 KB (1,267 words) - 19:28, 11 January 2009
• Data Jamboree 1/Agenda
  * 1:00 pm Working session on individual data * 3:30 pm Working session on individual data and group discussion
  2 KB (267 words) - 23:29, 17 April 2008
• Jamboree 1/Agenda/Project Personnel
  * 1:00 pm Working session on individual data * 3:30 pm Working session on individual data and group discussion
  3 KB (452 words) - 19:43, 16 April 2008
• Phenoscape data policy
  '''PhenoscapeKB Data Policy''' ...original paper (or, in some cases, unpublished manuscript) from which the data were derived, as well as a citation of the following form:
  1 KB (174 words) - 13:39, 26 March 2019
• Phenote User Guide
  ...take care of appending this for you.'' The Phenoscape configuration saves data for a project in 3 files; for this reason it is a good idea to create a sep The editor component displays a detailed data entry interface for the currently selected row in one of the table componen
  17 KB (2,828 words) - 20:06, 1 March 2011
• Data Jamboree 1/Annotation Experiment
  An annotation experiment was conducted on day 2 of the April 2008 Data Jamboree in order to assess curation consistency among the four trained par ...e following exercise, we would like to assess annotation consistency among data jamboree participants working independently on a common set of characters.
  15 KB (1,736 words) - 18:18, 10 April 2013
• Matrix annotation workflow
  The first Phenoscape [[Data Jamboree 1|data jamboree]] revealed that our curation workflow implemented in Phenote could ...ter states. As such, the curator will need to deal with far fewer rows of data when working in Phenote, as compared to simultaneous taxon annotation.
  13 KB (2,129 words) - 13:47, 9 September 2008
• Teleost Anatomy Ontology
  ...the [http://bioportal.bioontology.org/visualize/38362 NCBO BioPortal] and data annotated using TAO terms can be queried using the [http://kb.phenoscape.or
  4 KB (661 words) - 01:37, 15 August 2012
• Creating and Editing Character Lists
  ...ckup your file to the "Character-EQ lists (phenote+) folder" on phenoscape-data file share. *You can enter data directly in the Annotation Table by double or triple clicking on a cell unt
  4 KB (615 words) - 20:04, 9 July 2008

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