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• Data Jamboree 1/Annotation Experiment
  An annotation experiment was conducted on day 2 of the April 2008 Data Jamboree in order to assess curation consistency among the four trained par ...e following exercise, we would like to assess annotation consistency among data jamboree participants working independently on a common set of characters.
  15 KB (1,736 words) - 18:18, 10 April 2013
• Matrix annotation workflow
  The first Phenoscape [[Data Jamboree 1|data jamboree]] revealed that our curation workflow implemented in Phenote could ...ter states. As such, the curator will need to deal with far fewer rows of data when working in Phenote, as compared to simultaneous taxon annotation.
  13 KB (2,129 words) - 13:47, 9 September 2008
• Teleost Anatomy Ontology
  ...the [http://bioportal.bioontology.org/visualize/38362 NCBO BioPortal] and data annotated using TAO terms can be queried using the [http://kb.phenoscape.or
  4 KB (661 words) - 01:37, 15 August 2012
• Creating and Editing Character Lists
  ...ckup your file to the "Character-EQ lists (phenote+) folder" on phenoscape-data file share. *You can enter data directly in the Annotation Table by double or triple clicking on a cell unt
  4 KB (615 words) - 20:04, 9 July 2008
• Update Taxon Lists
  You can sort the data by clicking on any column header. Sort the "Taxon Comments" column to view ...te those that were used in the matrix. To find taxa associated with matrix data, look at: 1) the '''Matrix Taxon''' column in the Taxa Panel, which will co
  5 KB (759 words) - 21:14, 26 November 2012
• Data Jamboree 2
  ...lution to Genomics Using Phenotype Ontologies:'''<br/>'''Second Morphology Data Jamboree'''</big><br/><br/>A workshop hosted by the University of South Dak # Character data entry by experts; introduce new curators to Phenote and data entry; test/enhance curation consistency; further refine curation interface
  8 KB (1,022 words) - 20:08, 1 March 2011
• Category:Data Jamboree 2
  Index of pages tagged with category 'Data Jamboree 2'.
  7 members (0 subcategories, 0 files) - 21:58, 22 November 2008
• Data Jamboree 2/Agenda
  Agenda for the 2nd Phenoscape Data Jamboree and Project Meeting, held in South Dakota: * 9:45 am: Phenoscape data policy (Todd Vision)
  3 KB (367 words) - 03:57, 7 October 2008
• Phenoscape use cases
  ...ble reports of query results (e.g. candidate genes; comparative phenotypic data)" as a priority --[[User:Pmabee@usd.edu|Pmabee@usd.edu]] 18:15, 18 August 2 ...ven character values (or ambiguity) using, e.g. parsimony. The phenotypic data matrix is shown at the tips.
  14 KB (2,054 words) - 16:38, 26 September 2008
• Ontology-enabled reasoning across phenotypes from evolution and model organisms
  ...to large-scale computation so that they can be subjected to computational data integration and knowledge discovery techniques in ways similarly powerful a ...enotypes for vertebrate fin and limb characters with genetic and phenotype data from three vertebrate model organisms: [http://zfin.org zebrafish] (''Danio
  7 KB (945 words) - 20:11, 13 December 2019
• KB build process
  ...lt of this pipeline is a unified OWL dataset containing the ontologies and data. The result is loaded as RDF into a [[Bigdata|Blazegraph]] triplestore. ...ion. In doing so the inputs are, as far as possible, converted to a shared data model. EQ annotations are converted to a specific semantic representation.
  11 KB (1,489 words) - 18:14, 27 July 2015
• BBOP OBD visit
  * Began mapping of Phenex data model to OBD model. This is currently implemented in <code>org.phenoscape. .... However, this presents complications for adding or modifying data for a data set already in OBD.
  7 KB (1,072 words) - 02:38, 26 August 2008
• Data Jamboree 2/Prototype
  ** Empty current data from DB '''Done''' ** Continue DB data loading work '''Done'''
  1 KB (177 words) - 18:24, 26 September 2008
• BBOP OBD visit/Chris notes
  database from scratch. If all primary data is in cvs/svn/ftp we lose
  3 KB (505 words) - 02:31, 25 August 2008
• Data Jamboree 2/Preparation
  ***Revise same (Group annotation exercise) from data jamboree 1 ...icipants regarding their three assigned publications for annotation at the data jamboree -
  3 KB (392 words) - 17:43, 24 September 2008
• WG:All-Hands Meeting 30Sep08
• Data Jamboree 2/Notes
  * ability to prune species with no data (values) for export * Summarizing data per publication
  19 KB (2,935 words) - 15:05, 14 October 2008
• Data Jamboree 2/Annotation Experiment
  ...to five curators on the third day of the [[Data_Jamboree_2/Agenda | second data jamboree]]. The goals of the experiment were to assess curation consistency Only one of the five curators had experience using Phenex prior to the data roundup. Training for all curators consisted of:
  7 KB (996 words) - 14:46, 8 October 2008
• Phenoscape web UI planning
  * Could use OLS, but makes more sense to retrieve exact data we're working off of in the database ...summary counts be returned in? These are then used to navigate to further data services.
  2 KB (301 words) - 03:11, 23 October 2008
• Roadmap for first iteration
  * '''[Ongoing]''' Investigate and begin documenting additional data service needs required by interface * '''[Ongoing]''' Document data retrieval web service specifications
  5 KB (764 words) - 19:27, 11 October 2011

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