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  • Needs Analysis Workshop
    ...tions|driving biological research questions]] that take advantage of these data to push the limits of what is currently possible, and to identify what info
    8 KB (1,031 words) - 19:29, 11 January 2009
  • Driving Research Questions
    ...web-based interfaces to ensure that the system we are developing, and the data that we are collecting, will allow the research community to obtain answers ...t developmental and morphological phenotypes, single-gene mutant phenotype data from zebrafish would allow a detailed analysis of this issue for any evolut
    2 KB (332 words) - 05:26, 10 September 2008
  • Needs Analysis Workshop/Breakout group 1
    - structure of data would be fluid PM - data is representation of current knowledge - can change over time
    5 KB (829 words) - 20:03, 18 January 2008
  • Needs Analysis Workshop/Breakout group 2
    * collect imaging data, have sparser data on electrophysiology time series * kinds of data collected: expression imaging, histological sections, videos of behavior
    7 KB (1,020 words) - 20:03, 18 January 2008
  • Needs Analysis Workshop/Correlation Breakout
    ...d ways for doing character reconstruction - user will probably want to get data and run themselves
    3 KB (480 words) - 20:04, 18 January 2008
  • Needs Analysis Workshop/Phylogeny Breakout
    -have sets of data mapped on tree – for example , all in situs done for a particular gene… ...ave been done at all for species of interest; see which species have that data, download all the images.
    2 KB (308 words) - 20:04, 18 January 2008
  • Needs Analysis Workshop/Report-out Day1
    * need environmental, ecological, and geographical data
    2 KB (289 words) - 20:04, 18 January 2008
  • Needs Analysis Workshop/Prioritization
    ===Additional data types and query constraints=== [[Image:Day2-dataintegration.whiteboard.JPG|thumb|right|384px|Data interrelationships]]
    1 KB (125 words) - 20:05, 18 January 2008
  • Needs Analysis Workshop/Report-out Day2
    [[Image:Day2-dataintegration.whiteboard.JPG|thumb|right|384px|Data interrelationships]] * Other data types or dimensions we haven't looked at
    3 KB (470 words) - 20:05, 18 January 2008
  • Needs Analysis Workshop/Chalk talks
    ** how to link these two through, for example, a data repository
    3 KB (453 words) - 20:03, 18 January 2008
  • Needs Analysis Workshop/Semantics Breakout
    HL – might get data on a mutant that indicate that the red dot changed position PM – would be nice to have a representation that let you see data in two different ways
    7 KB (1,183 words) - 20:04, 18 January 2008
  • Training and Workshops
    ...ets of their interest that took advantage and promoted reuse of the KB’s data and services. ...oevolutionary patterns. A similarly rich set of tools, such as ontologies, data annotation models, and machine reasoners, have also recently been introduce
    18 KB (2,453 words) - 00:15, 10 December 2019
  • Publications and Posters
    * Data curation: Dahdul et al. (2018), Dahdul et al. (2015), Cui et al. (2015), Ar * Data modeling, reasoning & ontologies: Mabee et al. (2020), Manda et al. (2016)
    52 KB (6,895 words) - 22:42, 17 November 2023
  • EQ Editor requirements draft 1
    ...ode phenotypic data from an existing publication into the EQ format. This data consists of descriptions of character state values for corresponding specie ===Data Model===
    7 KB (1,124 words) - 23:41, 10 January 2009
  • Hypodigm
    ...otations to specimens within publications has been at issue. Our existing data model held all phenotype annotations at the level of particular specimens. Our discussion at the Biocuration meeting led to a new data model in which all phenotype annotations are expressed as properties of spe
    2 KB (393 words) - 21:55, 22 November 2008
  • Knowledgebase
    ...logical, spatial, and other requisite domain knowledge, the KB links these data to phenotypes reported in genetic perturbation studies for pertinent model For query answering the KB uses machine reasoning to match data by its semantics. The API also gives access to other machine reasoning-base
    1 KB (186 words) - 19:16, 26 September 2017
  • Ontology Request Broker
    In the process of annotating data files, curators may encounter terms in the data that have not yet been added to an appropriate ontology. Requesting a new o ...enoscape ontology editors can review the requested terms, independently of data annotation work. After adding a term to an appropriate ontology, or decidin
    3 KB (457 words) - 18:07, 13 November 2015
  • Phenoscape KB
    ..., and software infrastructure and services, bringing together evolutionary data matrices annotated by Phenoscape curators, model organism phenotype and gen ==Data sources==
    9 KB (1,386 words) - 13:53, 20 March 2014
  • Individual-based taxonomy
    The [http://www.evolutionaryontology.org/cdao Comparative Data Analysis Ontology] (CDAO) includes classes and properties for modeling phyl
    2 KB (350 words) - 20:31, 8 July 2013
  • Absence Phenotypes in OWL
    ...expressions are not equivalent but describe different aspects of the same data model.
    6 KB (853 words) - 20:39, 18 October 2013

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