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- ...lt of this pipeline is a unified OWL dataset containing the ontologies and data. The result is loaded as RDF into a [[Bigdata|Blazegraph]] triplestore. ...ion. In doing so the inputs are, as far as possible, converted to a shared data model. EQ annotations are converted to a specific semantic representation.11 KB (1,489 words) - 18:14, 27 July 2015
- * Began mapping of Phenex data model to OBD model. This is currently implemented in <code>org.phenoscape. .... However, this presents complications for adding or modifying data for a data set already in OBD.7 KB (1,072 words) - 02:38, 26 August 2008
- ** Empty current data from DB '''Done''' ** Continue DB data loading work '''Done'''1 KB (177 words) - 18:24, 26 September 2008
- database from scratch. If all primary data is in cvs/svn/ftp we lose3 KB (505 words) - 02:31, 25 August 2008
- ***Revise same (Group annotation exercise) from data jamboree 1 ...icipants regarding their three assigned publications for annotation at the data jamboree -3 KB (392 words) - 17:43, 24 September 2008
- WG:All-Hands Meeting 30Sep08
- * ability to prune species with no data (values) for export * Summarizing data per publication19 KB (2,935 words) - 15:05, 14 October 2008
- ...to five curators on the third day of the [[Data_Jamboree_2/Agenda | second data jamboree]]. The goals of the experiment were to assess curation consistency Only one of the five curators had experience using Phenex prior to the data roundup. Training for all curators consisted of:7 KB (996 words) - 14:46, 8 October 2008
- * Could use OLS, but makes more sense to retrieve exact data we're working off of in the database ...summary counts be returned in? These are then used to navigate to further data services.2 KB (301 words) - 03:11, 23 October 2008
- * '''[Ongoing]''' Investigate and begin documenting additional data service needs required by interface * '''[Ongoing]''' Document data retrieval web service specifications5 KB (764 words) - 19:27, 11 October 2011
- ...e still under development, Phenex is ready for use and enables our ongoing data curation activities. ===Data services built on OBD===2 KB (256 words) - 23:48, 10 January 2009
- ** Mockup interface using dummy data within web application - request group feedback ** Possible live demo depending on data service performance progress6 KB (783 words) - 22:51, 9 January 2014
- * Implement improved query methods to speed up execution of anatomy data services * Automate data loader module2 KB (274 words) - 19:25, 11 October 2011
- ...inally reasons with (as in infers implicit knowledge from) the downloaded data. ==OBD Data Model Entities==11 KB (1,531 words) - 16:06, 8 January 2009
- ...is an excerpt from such a Problem Log created during the execution of the Data Loader. The problematic, incomplete records are grouped under the name of t3 KB (365 words) - 23:59, 10 January 2009
- Mockup drawings created at the Phenoscape Data Roundup in September 2008. These are intended to stimulate discussion and [[Category:Data Jamboree 2]]1 KB (185 words) - 19:58, 19 January 2010
- ...s the queries that have been (or are to be) implemented for the Phenoscape data services, in addition to the execution details of each queries on the Postg ...onal, but their execution was very slow in terms of time. As a result, the data retrieval strategy used in the SICB prototype is being examined for bottlen3 KB (429 words) - 20:30, 21 January 2009
- WG:All-Hands Meeting 5Jan09
- ...a, adding top-down inferencing may cause widespread inconsistencies in the data if unchecked. ...between taxa and phenotypes, would cause incorrect inferencing and loss of data integrity. The easiest way to address this issue is to use different relati18 KB (2,610 words) - 17:18, 22 February 2010
- ...ation server at NESCent and can be found at /usr/local/projects/phenoscape-data-loader ==The Phenoscape data loader - A step by step review==3 KB (515 words) - 16:05, 29 October 2009
