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• Taxonomy ontology
  ...ss for use with the NCBI taxonomy to name the depth of the node within the tree. The link between the node term and the rank is only visible if you are usi def: "A level of depth within a species taxonomic tree" []
  29 KB (4,235 words) - 17:01, 31 August 2010
• Individual-based taxonomy
  ==Comparison with CDAO tree model== ...is not yet well developed, however one example is that for a phylogenetic tree information artifact we can state that we know all of the nodes descending
  2 KB (350 words) - 20:31, 8 July 2013
• Taxonomic Ranks
  ...rank chain correspond to a taxonomic term in each tip to root path in the tree.
  8 KB (970 words) - 03:40, 7 October 2008
• Jamboree 1/Agenda/Project Personnel
  ** ''complete taxon lists and tree files''
  3 KB (452 words) - 19:43, 16 April 2008
• Phenote User Guide
  ...be opened repeatedly to display multiple instances (e.g. Complete Ontology Tree View), while others will only display a single instance (e.g. Annotation Ed ...e third file in your project folder is an optional NEXUS file containing a tree relating your taxa. More information on this file can be found in the [[#P
  17 KB (2,828 words) - 20:06, 1 March 2011
• BBOP OBD visit/Chris notes
  alternative phyogenetic hypotheses? Metadata on how the tree was
  3 KB (505 words) - 02:31, 25 August 2008
• Phenoscape web UI
  * Mockup taxonomy-based tree-mapped data perspective ** View taxonomic phenotype annotation results organized by a phylogenetic tree
  6 KB (783 words) - 22:51, 9 January 2014
• Phenotype Ontology Coordination Workshop
  *# Tree group: How does phylogenetic tree inference vs. mapping intersect with the needs of a phenotype consortium? ...22(7) 345-50. [http://dx.doi.org/10.1016/j.tree.2007.03.013 doi:10.1016/j.tree.2007.03.013]
  10 KB (1,285 words) - 02:21, 21 February 2011
• Phenoscape Grant Renewal Workshop/Notes
  ** Tree mapping: show when an evolutionary phenotype first appeared ...r characters and types of coding; If you are trying to develop a consensus tree – can see how authors’ differ
  16 KB (2,313 words) - 17:34, 22 May 2009
• Change And Correlation
  ...omy tree pruned to include only the taxa where changes occurred. From this tree, the user could select a taxon to root the taxonomic distribution display. === Slide 2: January Tree Display ===
  8 KB (1,097 words) - 20:55, 29 April 2010
• Matching Phenotypes
  ...in model organisms and also appear as phenotype changes on an evolutionary tree. ...ng is known about such taxa and the presence of such taxa in the taxonomic tree should not affect the process of detecting change. The case where a taxon
  16 KB (2,382 words) - 17:40, 16 July 2012
• VTO Taxonomy Resources
  ...ly, the tool generates a taxonomy in the OBO format, though support for an individual-based OWL format is in progress.
  1 KB (216 words) - 20:58, 1 November 2011
• Semantics of phenotype annotations
  ...ssumes that taxa are represented as OWL individuals, and the taxonomy is a tree of ''subclade_of''/''contains_clade'' relationships. For example:
  3 KB (389 words) - 01:46, 29 August 2011
• Linking Evolution to Genomics Using Phenotype Ontologies
  ...ase], the [http://bio.slu.edu/mayden/cypriniformes/home.html Cypriniformes Tree of Life] project, the [http://www.deepfin.org/ DeepFin Research Coordinatio ...1/journal.pone.0010708 Dahdul et al, 2010]) in an “EQ” format ([[Media:TREE Mabee.pdf|Mabee et al. 2007a]]) using a combination of ontologies.
  6 KB (922 words) - 18:05, 2 November 2011
• KB-OWL
  ...classes. Thus, the taxonomic hierarchy is represented directly in RDF as a tree of ''subclade_of'' property relationships between taxa, rather than OWL sub
  4 KB (562 words) - 22:47, 9 January 2014