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- ...the ontology-specific functions enumerated below, and the Phenoscape KB [[Data Services]] implement a much richer set of phenotype annotation services tha ...h as EQ editors that heavily rely on such a service to plug into different data providers, local or remote, at their choice.7 KB (1,119 words) - 20:41, 20 September 2011
- ==Description of data model== The data warehouse has been designed with the intent of maximizing the efficiency of2 KB (264 words) - 15:30, 8 September 2009
- #REDIRECT [[Ontology Data Service API]]39 bytes (5 words) - 15:10, 18 April 2007
- ...nder a Creative Commons Attribution 3.0 Unported license (see [[Phenoscape data policy]]) ...Phenex and available on GitHub at https://github.com/phenoscape/phenoscape-data.3 KB (364 words) - 01:17, 26 March 2019
- ...olution to Genomics Using Phenotype Ontologies:'''<br/>'''First Morphology Data Jamboree'''</big><br/><br/>A workshop hosted by the National Evolutionary S ...ct personnel to work one-on-one on entering published systematic character data.9 KB (1,267 words) - 19:28, 11 January 2009
- * 1:00 pm Working session on individual data * 3:30 pm Working session on individual data and group discussion2 KB (267 words) - 23:29, 17 April 2008
- '''PhenoscapeKB Data Policy''' ...original paper (or, in some cases, unpublished manuscript) from which the data were derived, as well as a citation of the following form:1 KB (174 words) - 13:39, 26 March 2019
- #REDIRECT [[Data Jamboree 1/Agenda]]36 bytes (4 words) - 02:36, 12 April 2008
- An annotation experiment was conducted on day 2 of the April 2008 Data Jamboree in order to assess curation consistency among the four trained par ...e following exercise, we would like to assess annotation consistency among data jamboree participants working independently on a common set of characters.15 KB (1,736 words) - 18:18, 10 April 2013
- ...lution to Genomics Using Phenotype Ontologies:'''<br/>'''Second Morphology Data Jamboree'''</big><br/><br/>A workshop hosted by the University of South Dak # Character data entry by experts; introduce new curators to Phenote and data entry; test/enhance curation consistency; further refine curation interface8 KB (1,022 words) - 20:08, 1 March 2011
- #REDIRECT [[Data Jamboree 2/Agenda]]36 bytes (4 words) - 01:48, 27 July 2008
- Agenda for the 2nd Phenoscape Data Jamboree and Project Meeting, held in South Dakota: * 9:45 am: Phenoscape data policy (Todd Vision)3 KB (367 words) - 03:57, 7 October 2008
- ** Empty current data from DB '''Done''' ** Continue DB data loading work '''Done'''1 KB (177 words) - 18:24, 26 September 2008
- ***Revise same (Group annotation exercise) from data jamboree 1 ...icipants regarding their three assigned publications for annotation at the data jamboree -3 KB (392 words) - 17:43, 24 September 2008
- * ability to prune species with no data (values) for export * Summarizing data per publication19 KB (2,935 words) - 15:05, 14 October 2008
- ...to five curators on the third day of the [[Data_Jamboree_2/Agenda | second data jamboree]]. The goals of the experiment were to assess curation consistency Only one of the five curators had experience using Phenex prior to the data roundup. Training for all curators consisted of:7 KB (996 words) - 14:46, 8 October 2008
- #REDIRECT [[Data Jamboree 2/Notes]]35 bytes (4 words) - 03:48, 7 October 2008
- 26 bytes (2 words) - 00:44, 9 January 2009
- ...ation server at NESCent and can be found at /usr/local/projects/phenoscape-data-loader ==The Phenoscape data loader - A step by step review==3 KB (515 words) - 16:05, 29 October 2009
- {{StatusBox|This page documents data services for version 1 of the Phenoscape KB, available as a legacy resource This page details the data services that query the Phenoscape OBD database and transfer the retrieved46 KB (4,930 words) - 19:11, 29 June 2016
Page text matches
- * [[Phenoscape data policy]]151 bytes (16 words) - 23:41, 10 January 2009
- * [http://www.berkeleybop.org/obd/ Open Biomedical Data (OBD) data model, API, and other downloads]4 KB (476 words) - 19:39, 24 May 2018
- ...igured to load user-selected ontologies, and in this way can be adapted to data curation in different taxonomic groups. ===Phenoscape data repository===6 KB (808 words) - 22:14, 10 November 2012
- Phenotype data for model organisms are imported into the Phenoscape KB for mouse (MGI), hu ...nks to their pages). Taxonomic synonyms are particularly useful as aids to data curation, but common names can assist users in browsing the website. Taxono14 KB (2,022 words) - 17:42, 17 July 2018
- ...ations. When it is ready, we plan to integrate it with [[Phenex]], so that data curators can take advantage of natural-language processing to accelerate th1 KB (177 words) - 20:34, 26 March 2013
- ...g limitations in comparative studies of trait evolution: recombining trait data, modeling trait evolution, and generating testable hypotheses for the drive3 KB (426 words) - 22:31, 13 December 2019
- ...the ontology-specific functions enumerated below, and the Phenoscape KB [[Data Services]] implement a much richer set of phenotype annotation services tha ...h as EQ editors that heavily rely on such a service to plug into different data providers, local or remote, at their choice.7 KB (1,119 words) - 20:41, 20 September 2011
- ...be gray. By clicking on the column within the row you will be able to add data. #Go to:''' Data Set''' panel, go to Publication, and type in the author(s) and year for the8 KB (1,303 words) - 20:56, 26 November 2012
- #REDIRECT [[Ontology Data Service API]]39 bytes (5 words) - 23:56, 10 January 2009
- ...ode phenotypic data from an existing publication into the EQ format. This data consists of descriptions of character state values for corresponding specie ==Data Model==8 KB (1,279 words) - 17:54, 5 November 2008
- ==Description of data model== The data warehouse has been designed with the intent of maximizing the efficiency of2 KB (264 words) - 15:30, 8 September 2009
- ...group will tackle the logistics of developing such a database, from basic data entry curation through programming, beginning with a prototype.4 KB (634 words) - 23:47, 10 January 2009
- ...other. Furthermore, metrics such as semantic similarity can provide useful data that can be integrated into many steps in a phylogenetic comparative analys5 KB (740 words) - 21:57, 16 December 2019
- ...s, with no place to reference an independent character. So you may have a data set like this: ...or", and 1 value for "pectoral fin color". But nowhere in the existing EQ data formats is the character stored. We have to infer it from the PATO hierarc7 KB (1,089 words) - 23:42, 10 January 2009
- Here is sample data in the default configuration:935 bytes (135 words) - 23:57, 10 January 2009
- ...for evolutionary biology, designed to help biologists analyze comparative data about organisms." Mesquite is written in Java and supports extension via t764 bytes (99 words) - 23:51, 10 January 2009
- ...nder a Creative Commons Attribution 3.0 Unported license (see [[Phenoscape data policy]]) ...Phenex and available on GitHub at https://github.com/phenoscape/phenoscape-data.3 KB (364 words) - 01:17, 26 March 2019
- ...Notes#Taxon Concepts | Summary of a discussion of TTO issues at the second data jamboree (September 2008)]] Here is a preliminary taxonomy ontology, using data from a somewhat dated CoF dump. The taxa represented here are mentioned in29 KB (4,235 words) - 17:01, 31 August 2010
- [DONE] [nvarchar] (1) -- Once used to track data entry status; no longer used.7 KB (879 words) - 23:45, 10 January 2009
- ...s to be productively and efficiently used by curators -- March 2008 (first Data Jamboree)=== * '''[complete]''' Initial Phenote configuration for PhenoScape data model.4 KB (512 words) - 19:26, 11 October 2011
