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• Needs Analysis Workshop/Summary
  ...to enable synthetic research that takes full advantage of the accumulated data in each of these fields. We hoped to identify driving biological questions ...ife history, adaptation, and evolutionary time with phenotypic and genetic data to elucidate mechanisms of phenotypic change [[Needs Analysis Workshop/Brea
  10 KB (1,445 words) - 05:23, 10 September 2008
• Data Jamboree 1
  ...olution to Genomics Using Phenotype Ontologies:'''<br/>'''First Morphology Data Jamboree'''</big><br/><br/>A workshop hosted by the National Evolutionary S ...ct personnel to work one-on-one on entering published systematic character data.
  9 KB (1,267 words) - 19:28, 11 January 2009
• Data Jamboree 1/Agenda
  * 1:00 pm Working session on individual data * 3:30 pm Working session on individual data and group discussion
  2 KB (267 words) - 23:29, 17 April 2008
• Jamboree 1/Agenda/Project Personnel
  * 1:00 pm Working session on individual data * 3:30 pm Working session on individual data and group discussion
  3 KB (452 words) - 19:43, 16 April 2008
• Phenoscape data policy
  '''PhenoscapeKB Data Policy''' ...original paper (or, in some cases, unpublished manuscript) from which the data were derived, as well as a citation of the following form:
  1 KB (174 words) - 13:39, 26 March 2019
• Phenote User Guide
  ...take care of appending this for you.'' The Phenoscape configuration saves data for a project in 3 files; for this reason it is a good idea to create a sep The editor component displays a detailed data entry interface for the currently selected row in one of the table componen
  17 KB (2,828 words) - 20:06, 1 March 2011
• Data Jamboree 1/Annotation Experiment
  An annotation experiment was conducted on day 2 of the April 2008 Data Jamboree in order to assess curation consistency among the four trained par ...e following exercise, we would like to assess annotation consistency among data jamboree participants working independently on a common set of characters.
  15 KB (1,736 words) - 18:18, 10 April 2013
• Matrix annotation workflow
  The first Phenoscape [[Data Jamboree 1|data jamboree]] revealed that our curation workflow implemented in Phenote could ...ter states. As such, the curator will need to deal with far fewer rows of data when working in Phenote, as compared to simultaneous taxon annotation.
  13 KB (2,129 words) - 13:47, 9 September 2008
• Teleost Anatomy Ontology
  ...the [http://bioportal.bioontology.org/visualize/38362 NCBO BioPortal] and data annotated using TAO terms can be queried using the [http://kb.phenoscape.or
  4 KB (661 words) - 01:37, 15 August 2012
• Creating and Editing Character Lists
  ...ckup your file to the "Character-EQ lists (phenote+) folder" on phenoscape-data file share. *You can enter data directly in the Annotation Table by double or triple clicking on a cell unt
  4 KB (615 words) - 20:04, 9 July 2008
• Update Taxon Lists
  You can sort the data by clicking on any column header. Sort the "Taxon Comments" column to view ...te those that were used in the matrix. To find taxa associated with matrix data, look at: 1) the '''Matrix Taxon''' column in the Taxa Panel, which will co
  5 KB (759 words) - 21:14, 26 November 2012
• Data Jamboree 2
  ...lution to Genomics Using Phenotype Ontologies:'''<br/>'''Second Morphology Data Jamboree'''</big><br/><br/>A workshop hosted by the University of South Dak # Character data entry by experts; introduce new curators to Phenote and data entry; test/enhance curation consistency; further refine curation interface
  8 KB (1,022 words) - 20:08, 1 March 2011
• Data Jamboree 2/Agenda
  Agenda for the 2nd Phenoscape Data Jamboree and Project Meeting, held in South Dakota: * 9:45 am: Phenoscape data policy (Todd Vision)
  3 KB (367 words) - 03:57, 7 October 2008
• Phenoscape use cases
  ...ble reports of query results (e.g. candidate genes; comparative phenotypic data)" as a priority --[[User:Pmabee@usd.edu|Pmabee@usd.edu]] 18:15, 18 August 2 ...ven character values (or ambiguity) using, e.g. parsimony. The phenotypic data matrix is shown at the tips.
  14 KB (2,054 words) - 16:38, 26 September 2008
• Ontology-enabled reasoning across phenotypes from evolution and model organisms
  ...to large-scale computation so that they can be subjected to computational data integration and knowledge discovery techniques in ways similarly powerful a ...enotypes for vertebrate fin and limb characters with genetic and phenotype data from three vertebrate model organisms: [http://zfin.org zebrafish] (''Danio
  7 KB (945 words) - 20:11, 13 December 2019
• KB build process
  ...lt of this pipeline is a unified OWL dataset containing the ontologies and data. The result is loaded as RDF into a [[Bigdata|Blazegraph]] triplestore. ...ion. In doing so the inputs are, as far as possible, converted to a shared data model. EQ annotations are converted to a specific semantic representation.
  11 KB (1,489 words) - 18:14, 27 July 2015
• BBOP OBD visit
  * Began mapping of Phenex data model to OBD model. This is currently implemented in <code>org.phenoscape. .... However, this presents complications for adding or modifying data for a data set already in OBD.
  7 KB (1,072 words) - 02:38, 26 August 2008
• Data Jamboree 2/Prototype
  ** Empty current data from DB '''Done''' ** Continue DB data loading work '''Done'''
  1 KB (177 words) - 18:24, 26 September 2008
• BBOP OBD visit/Chris notes
  database from scratch. If all primary data is in cvs/svn/ftp we lose
  3 KB (505 words) - 02:31, 25 August 2008
• Data Jamboree 2/Preparation
  ***Revise same (Group annotation exercise) from data jamboree 1 ...icipants regarding their three assigned publications for annotation at the data jamboree -
  3 KB (392 words) - 17:43, 24 September 2008

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