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From phenoscape
- 2009 Grant Renewal Workshop
- 26feb07
- API
- ASIH09 workshop
- Absence
- Absence Phenotypes in OWL
- Acknowledgments
- Adding Taxa to PaleoDB
- Agenda
- Ambiguous specimen information: annotating phenotypes for specimens or species
- Amphibanat Phenex downloads
- Anatomy Ontology Conf calls
- Anatomy Ontology Development Plan
- Anatomy Tree Display
- Annotation Experiment
- Annotation status
- Annotator tutorial topics
- Announcements
- Author Guide
- BBOP OBD visit
- BBOP OBD visit/Chris notes
- Bigdata
- Categories
- Challenges in developing multi-species anatomy ontologies
- Change And Correlation
- CharaParser
- CoF schema
- Cof schema
- Collaborative Phenotype Annotation
- Collaborative phenotype annotation
- ComparativeAnalysis
- Complex Query Specification
- Conceptual Model of Data Warehouse
- Conceptual schema
- Conceptual schema of the Phenoscape data warehouse
- Configuring Mesquite with the NeXML plugin
- Contact
- Contributors
- Correlation and Disjoint Qualities
- Creating Taxon Lists
- Creating Tree Files
- Creating and Editing Character Lists
- Curation workflow
- Current queries
- Data Availability
- Data Jamboree 1
- Data Jamboree 1/Agenda
- Data Jamboree 1/Annotation Experiment
- Data Jamboree 1 Agenda
- Data Jamboree 2
- Data Jamboree 2/Agenda
- Data Jamboree 2/Annotation Experiment
- Data Jamboree 2/Notes
- Data Jamboree 2/Preparation
- Data Jamboree 2/Prototype
- Data Jamboree 2/Taxonomy
- Data Jamboree 2/agenda
- Data Repository and Data Services
- Data Services
- Database Roadmap
- Discussion about the Absence of Phenotypes issue
- Documenting taxon concepts used in a publication
- Documents
- Driving Research Questions
- EQ Editor
- EQ Editor requirements draft 1
- EQ for character matrices
- EQ shortcuts (temporary)
- Entities with taxonomic context
- FMNH 2010 Workshop
- Fish Evolution Working Group
- Forum
- Front end user interface tools
- Guide to Character Annotation
- Hypodigm
- Incubator
- Individual-based taxonomy
- Informatics
- Information
- Issue trackers
- Jamboree 1/Agenda/Project Personnel
- Jamboree 1 Agenda/Project Personnel
- Jamboree 1 Agenda -- Project Personnel
- Jimallman:AjaxBlocks.css
- Job Opportunities
- Journal Club
- KB-OWL
- KB build process
- KB data integrity checks
- Knowledgebase
- Knowledgebase/Ideas for the future
- Knowledgebase:File formats (for data downloads)
- Knowledgebase:Inferred annotations
- Knowledgebase:Phenotypes
- Knowledgebase Reports
- Knowledgebase mockups
- Knowledgebase mockups (Nov 2009)
- Knowledgebase tutorial
- Linking Evolution to Genomics Using Phenotype Ontologies
- Links
- Lists
- Logic and Reasoning Challenges
- Logo
- MX for phenotype annotation
- Main Page
- Map Annotations on Tree
- Map Multiple Phenotypes on Tree
- Map Qualities on Tree
- Matching Phenotypes
- Matrix annotation workflow
- Mesquite
- Modeling Absence of Phenotypes
- MultiEntity TreeView
- MultiEntity Tree View
- NAW Correlation Break-out
- NAW Phylogeny Break-out
- Needs Analysis Workshop
- Needs Analysis Workshop/Breakout group 1
- Needs Analysis Workshop/Breakout group 2
- Needs Analysis Workshop/Chalk talks
- Needs Analysis Workshop/Correlation Breakout
- Needs Analysis Workshop/Phylogeny Breakout
- Needs Analysis Workshop/Prioritization
- Needs Analysis Workshop/Report-out Day1
- Needs Analysis Workshop/Report-out Day2
- Needs Analysis Workshop/Semantics Breakout
- Needs Analysis Workshop/Summary
- Neglected items
- Notes from participants
- Novel reasoning strategies
- OBD API Documentation
- OBD Java API
- OBD Reasoner
- ORB TERM REQUEST PROTOTYPE
- ORB term request prototype
- OWL modeling of EQ phenotypes
- Ontologies
- Ontology-enabled reasoning across phenotypes from evolution and model organisms
- Ontology Data Service API
- Ontology Request Broker
- Ontology Service API Break-out Group
- Ontology workflow
- OpenID
- OpenURL
- PI Meeting 26feb07
- Participants
- Phenex
- Phenex release history
- Phenex term filter
- Phenoscape 1 Curated Publications
- Phenoscape Grant Renewal Workshop
- Phenoscape Grant Renewal Workshop/Notes
- Phenoscape I
- Phenoscape KB
- Phenoscape data loader
- Phenoscape data policy
- Phenoscape data repository
- Phenoscape use cases
- Phenoscape web UI
- Phenoscape web UI planning
- Phenote
- Phenote:Phylogeny-based Selector
- Phenote:Phylogeny Chooser
- Phenote:Specimen List
- Phenote User Guide
- Phenotype Ontology Coordination Workshop
- Postdoc2016
- Problem Log Format
- Project Plan
- Publications and Posters
- Queries
- Queries and Query Execution Plans
- Queries for Phenoscape UI demo'ed at SICB, Boston in Jan 2009
- Queries to be implemented in the future
- Query execution speed-up: The investigation
- Query strategy performance
- Reasoning over homology statements
- Relating taxa to phenotypes
- Resources for Data Contributors
- Resources for curators
- Roadmap for first iteration
- Semantics of phenotype annotations
- ShibAuth
- SingleEntity TreeView
- Skeletal Anatomy Jamboree
- Software
- Software roadmap
- Storing publication reference information
- Student Instructions
- SummerTraining2009
- Synchronization Tool
- TTOUpdate tool
- TTO Changes
- Taxonomic Rank Ontology
- Taxonomic Rank Vocabulary
- Taxonomic Ranks
- Taxonomy ontology
- Taxonomy ontology: ranks, unknown/unnamed species,
- Taxonomy ontology: ranks, unknown/unnamed species, & related issues
- Technical issues to be resolved in the reasoner and relation semantics
- Teleost Anatomy Ontology
- Teleost Taxonomy Ontology
- Term Definitions and References
- Term Requests
- Terminology
- The exhibits relation conundrum
- To Edit is Divine
- Tool support for Instances
- Tracker email processing
- Training and Workshops
- Transitive homology
- Triplestore Comparison
- Update Taxon Lists
- User testing - February 2010
- VTO Taxonomy Resources
- Virtuoso
- WebHints
- Web UI first iteration
- Web UI mockups
- Web application use cases
- ZFIN anatomy annotation counts
